Pan-genome Analysis of Plastomes from Lamiales using PGR-TK
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arXiv
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| Auteurs principaux: | , |
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| Format: | Preprint |
| Publié: |
2025
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| _version_ | 1866908360670969856 |
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| author | Veerendra, Aadhavan Samanta, Manoj |
| author_facet | Veerendra, Aadhavan Samanta, Manoj |
| contents | Chloroplast sequences from the Lamiales order were analyzed using the Pangenome Research Toolkit (PGR-TK). Overall, most genera and families exhibited a high degree of sequence uniformity. However, at the genus level, Utricularia, Incarvillea, and Orobanche stood out as particularly divergent. At the family level, Orobanchaceae, Bignoniaceae and Lentibulariaceae displayed notably complex patterns in the generated plots. The PGR-TK algorithm successfully distinguished most genera within their respective families and often recognized misclassified plants. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2505_07740 |
| institution | arXiv |
| publishDate | 2025 |
| record_format | arxiv |
| spellingShingle | Pan-genome Analysis of Plastomes from Lamiales using PGR-TK Veerendra, Aadhavan Samanta, Manoj Genomics Populations and Evolution Chloroplast sequences from the Lamiales order were analyzed using the Pangenome Research Toolkit (PGR-TK). Overall, most genera and families exhibited a high degree of sequence uniformity. However, at the genus level, Utricularia, Incarvillea, and Orobanche stood out as particularly divergent. At the family level, Orobanchaceae, Bignoniaceae and Lentibulariaceae displayed notably complex patterns in the generated plots. The PGR-TK algorithm successfully distinguished most genera within their respective families and often recognized misclassified plants. |
| title | Pan-genome Analysis of Plastomes from Lamiales using PGR-TK |
| topic | Genomics Populations and Evolution |
| url | https://arxiv.org/abs/2505.07740 |