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| Main Authors: | , , , , , , , , , , |
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| Format: | Preprint |
| Published: |
2025
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| Subjects: | |
| Online Access: | https://arxiv.org/abs/2505.10112 |
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| _version_ | 1866912376708661248 |
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| author | Goswami, Jayesh Banerjee, Shataneek Chakraborty, Snigdhadev Roy, Srestha Ghosh, Atanu Rath, Mrutyunjaya Das, Agniva Sagar, Mukul Swain, Krishna Kumari Pal, Prasanta Roy, Basudev |
| author_facet | Goswami, Jayesh Banerjee, Shataneek Chakraborty, Snigdhadev Roy, Srestha Ghosh, Atanu Rath, Mrutyunjaya Das, Agniva Sagar, Mukul Swain, Krishna Kumari Pal, Prasanta Roy, Basudev |
| contents | Conventionally, 3-dimensional cellular tomography can be done with light sheet or multi-angle observations. Recently, a new technique was introduced where the cell was rotated using convection currents to visualize the outer periphery (Liu et al., Nano Lett., 2023, 23, 5148). However, the work falls short of actually observing intracellular objects like organelles etc. In this manuscript, we modify the technique by relying on computer vision algorithm called Contrast Limited Adaptive Histogram Equalisation (CLAHE) to improve the contrast for better detection of intra-cellular points, and then use optical flow detection technique to extract the in-plane speed of the point. This then is used to extract the vertical location, knowing that at the bottom part of the sphere, the point would be moving in one direction, close to the center there would be much less motion, while in the top portion of the sphere, the point would be moving in the reverse direction than the bottom. The velocity allows the exact localisation of the point in the vertical direction. This process allows for sub-diffractive intracellular tomography. This technique can further allow high-resolution detection of fluorescent molecules inside the cell also, when combined with convective flows. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2505_10112 |
| institution | arXiv |
| publishDate | 2025 |
| record_format | arxiv |
| spellingShingle | A label-free sub-diffractive technique for 3D intracellular tomography using thermally induced convection currents Goswami, Jayesh Banerjee, Shataneek Chakraborty, Snigdhadev Roy, Srestha Ghosh, Atanu Rath, Mrutyunjaya Das, Agniva Sagar, Mukul Swain, Krishna Kumari Pal, Prasanta Roy, Basudev Optics Conventionally, 3-dimensional cellular tomography can be done with light sheet or multi-angle observations. Recently, a new technique was introduced where the cell was rotated using convection currents to visualize the outer periphery (Liu et al., Nano Lett., 2023, 23, 5148). However, the work falls short of actually observing intracellular objects like organelles etc. In this manuscript, we modify the technique by relying on computer vision algorithm called Contrast Limited Adaptive Histogram Equalisation (CLAHE) to improve the contrast for better detection of intra-cellular points, and then use optical flow detection technique to extract the in-plane speed of the point. This then is used to extract the vertical location, knowing that at the bottom part of the sphere, the point would be moving in one direction, close to the center there would be much less motion, while in the top portion of the sphere, the point would be moving in the reverse direction than the bottom. The velocity allows the exact localisation of the point in the vertical direction. This process allows for sub-diffractive intracellular tomography. This technique can further allow high-resolution detection of fluorescent molecules inside the cell also, when combined with convective flows. |
| title | A label-free sub-diffractive technique for 3D intracellular tomography using thermally induced convection currents |
| topic | Optics |
| url | https://arxiv.org/abs/2505.10112 |