:: Library Catalog

Cover Image

Saved in:

Bibliographic Details
Main Authors:	Khazaal, Abir, Vafaee, Fatemeh
Format:	Preprint
Published:	2025
Subjects:	Molecular Networks
Online Access:	https://arxiv.org/abs/2505.10741
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

Graphery: Interactive Tutorials for Biological Network Algorithms
by: Zeng, Heyuan, et al.
Published: (2021)

Biological Multi-Layer and Single Cell Network-Based Multiomics Models - a Review
by: Barylli, Marcello, et al.
Published: (2025)

Symmetries of Living Systems: Symmetry Fibrations and Synchronization in Biological Networks
by: Makse, Hernan A., et al.
Published: (2025)

Practical Causal Evaluation Metrics for Biological Networks
by: Sato, Noriaki, et al.
Published: (2025)

Physics Informed Constrained Learning of Dynamics from Static Data
by: Dang, Pengtao, et al.
Published: (2025)

Biological Pathway Informed Models with Graph Attention Networks (GATs)
by: Wong, Gavin, et al.
Published: (2025)

Biological insights from RIL-seq in bacteria
by: Silverman, Aviezer, et al.
Published: (2023)

Biological Regulatory Network Inference through Circular Causal Structure Learning
by: Jiang, Hongyang, et al.
Published: (2025)

WENDY: Covariance Dynamics Based Gene Regulatory Network Inference
by: Wang, Yue, et al.
Published: (2024)

BioCode: A Data-Driven Procedure to Learn the Growth of Biological Networks
by: Sefer, Emre
Published: (2021)

Modeling Dynamics, Cell Type Specificity, and Perturbations in Gene Regulatory Networks
by: Shin, Junha, et al.
Published: (2026)

Learning Biomolecular Models using Signal Temporal Logic
by: Krasowski, Hanna, et al.
Published: (2024)

From Regression to Classification: Exploring the Benefits of Categorical Representations of Energy in MLIPs
by: Ali, Ahmad
Published: (2025)

A Systemic Pathological Network Model and Combinatorial Intervention Strategies for Alzheimer's Disease
by: Xutong, She
Published: (2025)

Modularity Emerges from Action-Functional Constraints in Marine Metabolic Networks: A Biology-Scale Validation of the Network-Weighted Action Principle
by: Frasch, Martin G.
Published: (2026)

Approximate Hamilton-Jacobi Reachability Analysis for a Class of Two-Timescale Systems, with Application to Biological Models
by: Hirsch, Dylan, et al.
Published: (2025)

Graph Neural Network-Based Reinforcement Learning for Controlling Biological Networks - the GATTACA Framework
by: Mizera, Andrzej, et al.
Published: (2025)

GPU-accelerated Modeling of Biological Regulatory Networks
by: Reimer, Joyce, et al.
Published: (2025)

Weak Independence and Coupled Parallelism in Biological Petri Nets
by: Simao, Eugenio
Published: (2025)

GRiNS: A Python Library for Simulating Gene Regulatory Network Dynamics
by: Harlapur, Pradyumna, et al.
Published: (2025)

Dynamics of attractor transitions in Boolean networks under noise
by: Min, Byungjoon, et al.
Published: (2025)

Effective Kinetics of Chemical Reaction Networks
by: Suda, Tomoharu
Published: (2024)

Optimal Inference of Asynchronous Boolean Network Models
by: Karlebach, Guy
Published: (2025)

Molecular Network Control Through Boolean Canalization
by: Murrugarra, David, et al.
Published: (2015)

Understanding Multistationarity of Fully Open Reaction Networks
by: Yao, Shenghao, et al.
Published: (2024)

From Cancer Drivers to Cancer Keepers: Paradigm Shift and Clinical Implications
by: Zhang, Xizhe, et al.
Published: (2025)

Graphical Conditions ensuring Equality between Differential and Mean Stochastic Dynamics
by: Buscemi, Hugo, et al.
Published: (2024)

Determining the Equivalence of Small Zero-one Reaction Networks
by: Jiao, Yue, et al.
Published: (2025)

Evolving Diploid Boolean and Multi-Valued Gene Networks
by: Bull, Larry
Published: (2023)

TRENDY: Gene Regulatory Network Inference Enhanced by Transformer
by: Tian, Xueying, et al.
Published: (2024)

State- versus Reaction-Based Information Processing in Biochemical Networks
by: Moor, Anne-Lena, et al.
Published: (2025)

Central Dogma Cycle and Network: A Model for Cell Memory
by: Schiller, Martin R.
Published: (2025)

QWENDY: Gene Regulatory Network Inference by Quadruple Covariance Matrices
by: Wang, Yue, et al.
Published: (2025)

Quantifying the Total Effect of Edge Interventions in Discrete Multistate Networks
by: Murrugarra, David, et al.
Published: (2019)

BioModelsRAG: A Biological Modeling Assistant Using RAG (Retrieval Augmented Generation)
by: Krishnan, Bhavyahshree Navaneetha, et al.
Published: (2026)

A Characterization of Level-k Realizability for Clustering Systems
by: Dai, Shilong, et al.
Published: (2026)

Piezo1 Decodes Mechanical Forces via Allosteric Network Reprogramming
by: Zhang, Yuling, et al.
Published: (2025)

New GO-based Measures and Their Statistical Significance in Multiple Network Alignment
by: Mousapour, Reza, et al.
Published: (2023)

DRAGON: Determining Regulatory Associations using Graphical models on multi-Omic Networks
by: Shutta, Katherine H., et al.
Published: (2021)

Effects of Model Reduction on Coherence and Information Transfer in Stochastic Biochemical Systems
by: Lozano, Juan David Marmolejo, et al.
Published: (2025)