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Main Authors: Zhang, Wenchuan, Zhang, Penghao, Guo, Jingru, Cheng, Tao, Chen, Jie, Zhang, Shuwan, Zhang, Zhang, Yi, Yuhao, Bu, Hong
Format: Preprint
Published: 2025
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Online Access:https://arxiv.org/abs/2505.11404
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author Zhang, Wenchuan
Zhang, Penghao
Guo, Jingru
Cheng, Tao
Chen, Jie
Zhang, Shuwan
Zhang, Zhang
Yi, Yuhao
Bu, Hong
author_facet Zhang, Wenchuan
Zhang, Penghao
Guo, Jingru
Cheng, Tao
Chen, Jie
Zhang, Shuwan
Zhang, Zhang
Yi, Yuhao
Bu, Hong
contents Recent advances in vision language models (VLMs) have enabled broad progress in the general medical field. However, pathology still remains a more challenging subdomain, with current pathology specific VLMs exhibiting limitations in both diagnostic accuracy and reasoning plausibility. Such shortcomings are largely attributable to the nature of current pathology datasets, which are primarily composed of image description pairs that lack the depth and structured diagnostic paradigms employed by real world pathologists. In this study, we leverage pathology textbooks and real world pathology experts to construct high-quality, reasoning-oriented datasets. Building on this, we introduce Patho-R1, a multimodal RL-based pathology Reasoner, trained through a three-stage pipeline: (1) continued pretraining on 3.5 million image-text pairs for knowledge infusion; (2) supervised fine-tuning on 500k high-quality Chain-of-Thought samples for reasoning incentivizing; (3) reinforcement learning using Group Relative Policy Optimization and Decoupled Clip and Dynamic sAmpling Policy Optimization strategies for multimodal reasoning quality refinement. To further assess the alignment quality of our dataset, we propose Patho-CLIP, trained on the same figure-caption corpus used for continued pretraining. Comprehensive experimental results demonstrate that both Patho-CLIP and Patho-R1 achieve robust performance across a wide range of pathology-related tasks, including zero-shot classification, cross-modal retrieval, Visual Question Answering, and Multiple Choice Question. Our project is available at the Patho-R1 repository: https://github.com/Wenchuan-Zhang/Patho-R1.
format Preprint
id arxiv_https___arxiv_org_abs_2505_11404
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle Patho-R1: A Multimodal Reinforcement Learning-Based Pathology Expert Reasoner
Zhang, Wenchuan
Zhang, Penghao
Guo, Jingru
Cheng, Tao
Chen, Jie
Zhang, Shuwan
Zhang, Zhang
Yi, Yuhao
Bu, Hong
Computer Vision and Pattern Recognition
Artificial Intelligence
Recent advances in vision language models (VLMs) have enabled broad progress in the general medical field. However, pathology still remains a more challenging subdomain, with current pathology specific VLMs exhibiting limitations in both diagnostic accuracy and reasoning plausibility. Such shortcomings are largely attributable to the nature of current pathology datasets, which are primarily composed of image description pairs that lack the depth and structured diagnostic paradigms employed by real world pathologists. In this study, we leverage pathology textbooks and real world pathology experts to construct high-quality, reasoning-oriented datasets. Building on this, we introduce Patho-R1, a multimodal RL-based pathology Reasoner, trained through a three-stage pipeline: (1) continued pretraining on 3.5 million image-text pairs for knowledge infusion; (2) supervised fine-tuning on 500k high-quality Chain-of-Thought samples for reasoning incentivizing; (3) reinforcement learning using Group Relative Policy Optimization and Decoupled Clip and Dynamic sAmpling Policy Optimization strategies for multimodal reasoning quality refinement. To further assess the alignment quality of our dataset, we propose Patho-CLIP, trained on the same figure-caption corpus used for continued pretraining. Comprehensive experimental results demonstrate that both Patho-CLIP and Patho-R1 achieve robust performance across a wide range of pathology-related tasks, including zero-shot classification, cross-modal retrieval, Visual Question Answering, and Multiple Choice Question. Our project is available at the Patho-R1 repository: https://github.com/Wenchuan-Zhang/Patho-R1.
title Patho-R1: A Multimodal Reinforcement Learning-Based Pathology Expert Reasoner
topic Computer Vision and Pattern Recognition
Artificial Intelligence
url https://arxiv.org/abs/2505.11404