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Main Authors: Li, Xiaomin, Gao, Mingye, Hao, Yuexing, Li, Taoran, Wan, Guangya, Wang, Zihan, Wang, Yijun
Format: Preprint
Published: 2025
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Online Access:https://arxiv.org/abs/2505.11613
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author Li, Xiaomin
Gao, Mingye
Hao, Yuexing
Li, Taoran
Wan, Guangya
Wang, Zihan
Wang, Yijun
author_facet Li, Xiaomin
Gao, Mingye
Hao, Yuexing
Li, Taoran
Wan, Guangya
Wang, Zihan
Wang, Yijun
contents Clinical guidelines, typically structured as decision trees, are central to evidence-based medical practice and critical for ensuring safe and accurate diagnostic decision-making. However, it remains unclear whether Large Language Models (LLMs) can reliably follow such structured protocols. In this work, we introduce MedGUIDE, a new benchmark for evaluating LLMs on their ability to make guideline-consistent clinical decisions. MedGUIDE is constructed from 55 curated NCCN decision trees across 17 cancer types and uses clinical scenarios generated by LLMs to create a large pool of multiple-choice diagnostic questions. We apply a two-stage quality selection process, combining expert-labeled reward models and LLM-as-a-judge ensembles across ten clinical and linguistic criteria, to select 7,747 high-quality samples. We evaluate 25 LLMs spanning general-purpose, open-source, and medically specialized models, and find that even domain-specific LLMs often underperform on tasks requiring structured guideline adherence. We also test whether performance can be improved via in-context guideline inclusion or continued pretraining. Our findings underscore the importance of MedGUIDE in assessing whether LLMs can operate safely within the procedural frameworks expected in real-world clinical settings.
format Preprint
id arxiv_https___arxiv_org_abs_2505_11613
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle MedGUIDE: Benchmarking Clinical Decision-Making in Large Language Models
Li, Xiaomin
Gao, Mingye
Hao, Yuexing
Li, Taoran
Wan, Guangya
Wang, Zihan
Wang, Yijun
Computation and Language
Clinical guidelines, typically structured as decision trees, are central to evidence-based medical practice and critical for ensuring safe and accurate diagnostic decision-making. However, it remains unclear whether Large Language Models (LLMs) can reliably follow such structured protocols. In this work, we introduce MedGUIDE, a new benchmark for evaluating LLMs on their ability to make guideline-consistent clinical decisions. MedGUIDE is constructed from 55 curated NCCN decision trees across 17 cancer types and uses clinical scenarios generated by LLMs to create a large pool of multiple-choice diagnostic questions. We apply a two-stage quality selection process, combining expert-labeled reward models and LLM-as-a-judge ensembles across ten clinical and linguistic criteria, to select 7,747 high-quality samples. We evaluate 25 LLMs spanning general-purpose, open-source, and medically specialized models, and find that even domain-specific LLMs often underperform on tasks requiring structured guideline adherence. We also test whether performance can be improved via in-context guideline inclusion or continued pretraining. Our findings underscore the importance of MedGUIDE in assessing whether LLMs can operate safely within the procedural frameworks expected in real-world clinical settings.
title MedGUIDE: Benchmarking Clinical Decision-Making in Large Language Models
topic Computation and Language
url https://arxiv.org/abs/2505.11613