Multi-omic Causal Discovery using Genotypes and Gene Expression
Fuente:
arXiv
Saved in:
| Main Authors: | Asiedu, Stephen, Watson, David |
|---|---|
| Format: | Preprint |
| Published: |
2025
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
On the Recoverability of Causal Relations from Bulk Gene Expression Data
by: Luo, Gongxu, et al.
Published: (2026)
by: Luo, Gongxu, et al.
Published: (2026)
Modeling Gene Expression Distributional Shifts for Unseen Genetic Perturbations
by: Ramakrishnan, Kalyan, et al.
Published: (2025)
by: Ramakrishnan, Kalyan, et al.
Published: (2025)
A Standardized Framework For Evaluating Gene Expression Generative Models
by: Rubbi, Andrea, et al.
Published: (2026)
by: Rubbi, Andrea, et al.
Published: (2026)
Toward a Team of AI-made Scientists for Scientific Discovery from Gene Expression Data
by: Liu, Haoyang, et al.
Published: (2024)
by: Liu, Haoyang, et al.
Published: (2024)
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models
by: Palla, Giovanni, et al.
Published: (2025)
by: Palla, Giovanni, et al.
Published: (2025)
A Comparative Analysis of Gene Expression Profiling by Statistical and Machine Learning Approaches
by: Bontonou, Myriam, et al.
Published: (2024)
by: Bontonou, Myriam, et al.
Published: (2024)
Interpretable deep learning in single-cell omics
by: Wagle, Manoj M, et al.
Published: (2024)
by: Wagle, Manoj M, et al.
Published: (2024)
Machine Learning-Based Analysis of Ebola Virus' Impact on Gene Expression in Nonhuman Primates
by: Rezapour, Mostafa, et al.
Published: (2024)
by: Rezapour, Mostafa, et al.
Published: (2024)
Identifying multi-omics interactions for lung cancer drug targets discovery using Kernel Machine Regression
by: Ahmed, Md. Imtyaz, et al.
Published: (2025)
by: Ahmed, Md. Imtyaz, et al.
Published: (2025)
UnPaSt: unsupervised patient stratification by biclustering of omics data
by: Hartung, Michael, et al.
Published: (2024)
by: Hartung, Michael, et al.
Published: (2024)
Extending Sequence Length is Not All You Need: Effective Integration of Multimodal Signals for Gene Expression Prediction
by: Yang, Zhao, et al.
Published: (2026)
by: Yang, Zhao, et al.
Published: (2026)
GenoMAS: A Multi-Agent Framework for Scientific Discovery via Code-Driven Gene Expression Analysis
by: Liu, Haoyang, et al.
Published: (2025)
by: Liu, Haoyang, et al.
Published: (2025)
Machine learning applied to omics data
by: Calviño, Aida, et al.
Published: (2024)
by: Calviño, Aida, et al.
Published: (2024)
G2DR: A Genotype-First Framework for Genetics-Informed Target Prioritization and Drug Repurposing
by: Muneeb, Muhammad, et al.
Published: (2026)
by: Muneeb, Muhammad, et al.
Published: (2026)
Feature Dimensionality Outweighs Model Complexity in Breast Cancer Subtype Classification Using TCGA-BRCA Gene Expression Data
by: Hasani, Meena Al
Published: (2026)
by: Hasani, Meena Al
Published: (2026)
SpaDiT: Diffusion Transformer for Spatial Gene Expression Prediction using scRNA-seq
by: Li, Xiaoyu, et al.
Published: (2024)
by: Li, Xiaoyu, et al.
Published: (2024)
Genetic algorithms for multi-omic feature selection: a comparative study in cancer survival analysis
by: Cattelani, Luca, et al.
Published: (2026)
by: Cattelani, Luca, et al.
Published: (2026)
LSTM Autoencoder-based Deep Neural Networks for Barley Genotype-to-Phenotype Prediction
by: Wang, Guanjin, et al.
Published: (2024)
by: Wang, Guanjin, et al.
Published: (2024)
Estimating the Causal Effects of T Cell Receptors
by: Weinstein, Eli N., et al.
Published: (2024)
by: Weinstein, Eli N., et al.
Published: (2024)
SNPgen: Phenotype-Supervised Genotype Representation and Synthetic Data Generation via Latent Diffusion
by: Lampis, Andrea, et al.
Published: (2026)
by: Lampis, Andrea, et al.
Published: (2026)
Meta-Learning on Augmented Gene Expression Profiles for Enhanced Lung Cancer Detection
by: Moghaddam, Arya Hadizadeh, et al.
Published: (2024)
by: Moghaddam, Arya Hadizadeh, et al.
Published: (2024)
GenoTEX: An LLM Agent Benchmark for Automated Gene Expression Data Analysis
by: Liu, Haoyang, et al.
Published: (2024)
by: Liu, Haoyang, et al.
Published: (2024)
Auxiliary Gene Learning: Spatial Gene Expression Estimation by Auxiliary Gene Selection
by: Shiku, Kaito, et al.
Published: (2025)
by: Shiku, Kaito, et al.
Published: (2025)
Beyond Independent Genes: Learning Module-Inductive Representations for Gene Perturbation Prediction
by: Ruan, Jiafa, et al.
Published: (2026)
by: Ruan, Jiafa, et al.
Published: (2026)
Quantum-Enhanced Classification of Brain Tumors Using DNA Microarray Gene Expression Profiles
by: Akpinar, Emine, et al.
Published: (2025)
by: Akpinar, Emine, et al.
Published: (2025)
HR-VILAGE-3K3M: A Human Respiratory Viral Immunization Longitudinal Gene Expression Dataset for Systems Immunity
by: Sun, Xuejun, et al.
Published: (2025)
by: Sun, Xuejun, et al.
Published: (2025)
scI2CL: Effectively Integrating Single-cell Multi-omics by Intra- and Inter-omics Contrastive Learning
by: Liu, Wuchao, et al.
Published: (2025)
by: Liu, Wuchao, et al.
Published: (2025)
Quantum AI for Cancer Diagnostic Biomarker Discovery
by: Saggi, Mandeep Kaur, et al.
Published: (2026)
by: Saggi, Mandeep Kaur, et al.
Published: (2026)
Deep Generative Models for Discrete Genotype Simulation
by: Xie, Sihan, et al.
Published: (2025)
by: Xie, Sihan, et al.
Published: (2025)
Disentangling Genotype and Environment Specific Latent Features for Improved Trait Prediction using a Compositional Autoencoder
by: Powadi, Anirudha, et al.
Published: (2024)
by: Powadi, Anirudha, et al.
Published: (2024)
Annotation-Informed Block-Sparse Bayesian Modeling for cis-Expression Prediction
by: Huang, Lei, et al.
Published: (2026)
by: Huang, Lei, et al.
Published: (2026)
Whole Genome Transformer for Gene Interaction Effects in Microbiome Habitat Specificity
by: Li, Zhufeng, et al.
Published: (2024)
by: Li, Zhufeng, et al.
Published: (2024)
GenoBERT: A Language Model for Accurate Genotype Imputation
by: Huang, Lei, et al.
Published: (2026)
by: Huang, Lei, et al.
Published: (2026)
Bayesian Cox model with graph-structured variable selection priors for multi-omics biomarker identification
by: Hermansen, Tobias Østmo, et al.
Published: (2025)
by: Hermansen, Tobias Østmo, et al.
Published: (2025)
Large Language Models for Zero-shot Inference of Causal Structures in Biology
by: Newsham, Izzy, et al.
Published: (2025)
by: Newsham, Izzy, et al.
Published: (2025)
RNAMunin: A Deep Machine Learning Model for Non-coding RNA Discovery
by: Lui, Lauren, et al.
Published: (2025)
by: Lui, Lauren, et al.
Published: (2025)
Discovery of Disease Relationships via Transcriptomic Signature Analysis Powered by Agentic AI
by: Chen, Ke, et al.
Published: (2025)
by: Chen, Ke, et al.
Published: (2025)
CFM-GP: Unified Conditional Flow Matching to Learn Gene Perturbation Across Cell Types
by: Abir, Abrar Rahman, et al.
Published: (2025)
by: Abir, Abrar Rahman, et al.
Published: (2025)
Hierarchical Bayesian Model for Gene Deconvolution and Functional Analysis in Human Endometrium Across the Menstrual Cycle
by: Su, Crystal, et al.
Published: (2025)
by: Su, Crystal, et al.
Published: (2025)
Evaluating Deep Regression Models for WSI-Based Gene-Expression Prediction
by: Gustafsson, Fredrik K., et al.
Published: (2024)
by: Gustafsson, Fredrik K., et al.
Published: (2024)
Similar Items
-
On the Recoverability of Causal Relations from Bulk Gene Expression Data
by: Luo, Gongxu, et al.
Published: (2026) -
Modeling Gene Expression Distributional Shifts for Unseen Genetic Perturbations
by: Ramakrishnan, Kalyan, et al.
Published: (2025) -
A Standardized Framework For Evaluating Gene Expression Generative Models
by: Rubbi, Andrea, et al.
Published: (2026) -
Toward a Team of AI-made Scientists for Scientific Discovery from Gene Expression Data
by: Liu, Haoyang, et al.
Published: (2024) -
Scalable Single-Cell Gene Expression Generation with Latent Diffusion Models
by: Palla, Giovanni, et al.
Published: (2025)