Uncertainty Estimation for Heterophilic Graphs Through the Lens of Information Theory

Fuente: arXiv
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Autori principali: Fuchsgruber, Dominik, Wollschläger, Tom, Bordne, Johannes, Günnemann, Stephan
Natura: Preprint
Pubblicazione: 2025
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author Fuchsgruber, Dominik
Wollschläger, Tom
Bordne, Johannes
Günnemann, Stephan
author_facet Fuchsgruber, Dominik
Wollschläger, Tom
Bordne, Johannes
Günnemann, Stephan
contents While uncertainty estimation for graphs recently gained traction, most methods rely on homophily and deteriorate in heterophilic settings. We address this by analyzing message passing neural networks from an information-theoretic perspective and developing a suitable analog to data processing inequality to quantify information throughout the model's layers. In contrast to non-graph domains, information about the node-level prediction target can increase with model depth if a node's features are semantically different from its neighbors. Therefore, on heterophilic graphs, the latent embeddings of an MPNN each provide different information about the data distribution - different from homophilic settings. This reveals that considering all node representations simultaneously is a key design principle for epistemic uncertainty estimation on graphs beyond homophily. We empirically confirm this with a simple post-hoc density estimator on the joint node embedding space that provides state-of-the-art uncertainty on heterophilic graphs. At the same time, it matches prior work on homophilic graphs without explicitly exploiting homophily through post-processing.
format Preprint
id arxiv_https___arxiv_org_abs_2505_22152
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle Uncertainty Estimation for Heterophilic Graphs Through the Lens of Information Theory
Fuchsgruber, Dominik
Wollschläger, Tom
Bordne, Johannes
Günnemann, Stephan
Machine Learning
Social and Information Networks
While uncertainty estimation for graphs recently gained traction, most methods rely on homophily and deteriorate in heterophilic settings. We address this by analyzing message passing neural networks from an information-theoretic perspective and developing a suitable analog to data processing inequality to quantify information throughout the model's layers. In contrast to non-graph domains, information about the node-level prediction target can increase with model depth if a node's features are semantically different from its neighbors. Therefore, on heterophilic graphs, the latent embeddings of an MPNN each provide different information about the data distribution - different from homophilic settings. This reveals that considering all node representations simultaneously is a key design principle for epistemic uncertainty estimation on graphs beyond homophily. We empirically confirm this with a simple post-hoc density estimator on the joint node embedding space that provides state-of-the-art uncertainty on heterophilic graphs. At the same time, it matches prior work on homophilic graphs without explicitly exploiting homophily through post-processing.
title Uncertainty Estimation for Heterophilic Graphs Through the Lens of Information Theory
topic Machine Learning
Social and Information Networks
url https://arxiv.org/abs/2505.22152