Not Just $N_e$ $N_e$-more: New Applications for SMC from Ecology to Phylogenies
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arXiv
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| Main Authors: | Peede, David, Cousins, Trevor, Durvasula, Arun, Ignatieva, Anastasia, Kovacs, Toby G. L., Nieto, Alba, Puckett, Emily E., Chevy, Elizabeth T. |
|---|---|
| Format: | Preprint |
| Published: |
2025
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| Subjects: | |
| Online Access: | |
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