Subdiffusion from competition between multi-exponential friction memory and energy barriers
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arXiv
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| Autores principales: | , , |
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| Formato: | Preprint |
| Publicado: |
2025
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| _version_ | 1866910983587364864 |
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| author | Klimek, Anton Dalton, Benjamin A. Netz, Roland R. |
| author_facet | Klimek, Anton Dalton, Benjamin A. Netz, Roland R. |
| contents | Subdiffusion is a hallmark of complex systems, ranging from protein folding to transport in viscoelastic media. However, despite its pervasiveness, the mechanistic origins of subdiffusion remain contested. Here, we analyze both Markovian and non-Markovian dynamics, in the presence and absence of energy barriers, in order to disentangle the distinct contributions of memory-dependent friction and energy barriers to the emergence of subdiffusive behavior. Focusing on the mean squared displacement (MSD), we develop an analytical framework that connects subdiffusion to multiscale memory effects in the generalized Langevin equation (GLE), and derive the subdiffusive scaling behavior of the MSD for systems governed by multi-exponential memory kernels. We identify persistence and relaxation timescales that delineate dynamical regimes in which subdiffusion arises from either memory or energy barrier effects. By comparing analytical predictions with simulations, we confirm that memory dominates the overdamped dynamics for barrier heights up to approximately $2\,k_BT$, a regime recently shown to be relevant for protein folding. Overall, our results advance the theoretical understanding of anomalous diffusion and provide practical tools that are broadly applicable to fields as diverse as molecular biophysics, polymer physics, and active matter systems. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2506_03036 |
| institution | arXiv |
| publishDate | 2025 |
| record_format | arxiv |
| spellingShingle | Subdiffusion from competition between multi-exponential friction memory and energy barriers Klimek, Anton Dalton, Benjamin A. Netz, Roland R. Soft Condensed Matter Statistical Mechanics Biological Physics Subdiffusion is a hallmark of complex systems, ranging from protein folding to transport in viscoelastic media. However, despite its pervasiveness, the mechanistic origins of subdiffusion remain contested. Here, we analyze both Markovian and non-Markovian dynamics, in the presence and absence of energy barriers, in order to disentangle the distinct contributions of memory-dependent friction and energy barriers to the emergence of subdiffusive behavior. Focusing on the mean squared displacement (MSD), we develop an analytical framework that connects subdiffusion to multiscale memory effects in the generalized Langevin equation (GLE), and derive the subdiffusive scaling behavior of the MSD for systems governed by multi-exponential memory kernels. We identify persistence and relaxation timescales that delineate dynamical regimes in which subdiffusion arises from either memory or energy barrier effects. By comparing analytical predictions with simulations, we confirm that memory dominates the overdamped dynamics for barrier heights up to approximately $2\,k_BT$, a regime recently shown to be relevant for protein folding. Overall, our results advance the theoretical understanding of anomalous diffusion and provide practical tools that are broadly applicable to fields as diverse as molecular biophysics, polymer physics, and active matter systems. |
| title | Subdiffusion from competition between multi-exponential friction memory and energy barriers |
| topic | Soft Condensed Matter Statistical Mechanics Biological Physics |
| url | https://arxiv.org/abs/2506.03036 |