H$^2$GFM: Towards unifying Homogeneity and Heterogeneity on Text-Attributed Graphs

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Main Authors: Nguyen, Trung-Kien, Ping, Heng, Li, Shixuan, Zhang, Peiyu, Kanakaris, Nikos, Kotov, Nicholas, Bogdan, Paul
Format: Preprint
Published: 2025
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author Nguyen, Trung-Kien
Ping, Heng
Li, Shixuan
Zhang, Peiyu
Kanakaris, Nikos
Kotov, Nicholas
Bogdan, Paul
author_facet Nguyen, Trung-Kien
Ping, Heng
Li, Shixuan
Zhang, Peiyu
Kanakaris, Nikos
Kotov, Nicholas
Bogdan, Paul
contents The growing interests and applications of graph learning in diverse domains have propelled the development of a unified model generalizing well across different graphs and tasks, known as the Graph Foundation Model (GFM). Existing research has leveraged text-attributed graphs (TAGs) to tackle the heterogeneity in node features among graphs. However, they primarily focus on homogeneous TAGs (HoTAGs), leaving heterogeneous TAGs (HeTAGs), where multiple types of nodes/edges reside, underexplored. To enhance the capabilities and applications of GFM, we introduce H$^2$GFM, a novel framework designed to generalize across both HoTAGs and HeTAGs. Our model projects diverse meta-relations among graphs under a unified textual space, and employs a context encoding to capture spatial and higher-order semantic relationships. To achieve robust node representations, we propose a novel context-adaptive graph transformer (CGT), effectively capturing information from both context neighbors and their relationships. Furthermore, we employ a mixture of CGT experts to capture the heterogeneity in structural patterns among graph types. Comprehensive experiments on a wide range of HoTAGs and HeTAGs as well as learning scenarios demonstrate the effectiveness of our model.
format Preprint
id arxiv_https___arxiv_org_abs_2506_08298
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle H$^2$GFM: Towards unifying Homogeneity and Heterogeneity on Text-Attributed Graphs
Nguyen, Trung-Kien
Ping, Heng
Li, Shixuan
Zhang, Peiyu
Kanakaris, Nikos
Kotov, Nicholas
Bogdan, Paul
Machine Learning
Social and Information Networks
The growing interests and applications of graph learning in diverse domains have propelled the development of a unified model generalizing well across different graphs and tasks, known as the Graph Foundation Model (GFM). Existing research has leveraged text-attributed graphs (TAGs) to tackle the heterogeneity in node features among graphs. However, they primarily focus on homogeneous TAGs (HoTAGs), leaving heterogeneous TAGs (HeTAGs), where multiple types of nodes/edges reside, underexplored. To enhance the capabilities and applications of GFM, we introduce H$^2$GFM, a novel framework designed to generalize across both HoTAGs and HeTAGs. Our model projects diverse meta-relations among graphs under a unified textual space, and employs a context encoding to capture spatial and higher-order semantic relationships. To achieve robust node representations, we propose a novel context-adaptive graph transformer (CGT), effectively capturing information from both context neighbors and their relationships. Furthermore, we employ a mixture of CGT experts to capture the heterogeneity in structural patterns among graph types. Comprehensive experiments on a wide range of HoTAGs and HeTAGs as well as learning scenarios demonstrate the effectiveness of our model.
title H$^2$GFM: Towards unifying Homogeneity and Heterogeneity on Text-Attributed Graphs
topic Machine Learning
Social and Information Networks
url https://arxiv.org/abs/2506.08298