MRI-CORE: A Foundation Model for Magnetic Resonance Imaging

Fuente: arXiv
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Main Authors: Dong, Haoyu, Chen, Yuwen, Gu, Hanxue, Konz, Nicholas, Chen, Yaqian, Li, Qihang, Mazurowski, Maciej A.
Format: Preprint
Published: 2025
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author Dong, Haoyu
Chen, Yuwen
Gu, Hanxue
Konz, Nicholas
Chen, Yaqian
Li, Qihang
Mazurowski, Maciej A.
author_facet Dong, Haoyu
Chen, Yuwen
Gu, Hanxue
Konz, Nicholas
Chen, Yaqian
Li, Qihang
Mazurowski, Maciej A.
contents The widespread use of Magnetic Resonance Imaging (MRI) in combination with deep learning shows promise for many high-impact automated diagnostic and prognostic tools. However, training new models requires large amounts of labeled data, a challenge due to high cost of precise annotations and data privacy. To address this issue, we introduce the MRI-CORE, a vision foundation model trained using more than 6 million slices from over 110 thousand MRI volumes across 18 body locations. Our experiments show notable improvements in performance over state-of-the-art methods in 13 data-restricted segmentation tasks, as well as in image classification, and zero-shot segmentation, showing the strong potential of MRI-CORE to enable data-efficient development of artificial intelligence models. We also present data on which strategies yield most useful foundation models and a novel analysis relating similarity between pre-training and downstream task data with transfer learning performance. Our model is publicly available with a permissive license.
format Preprint
id arxiv_https___arxiv_org_abs_2506_12186
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle MRI-CORE: A Foundation Model for Magnetic Resonance Imaging
Dong, Haoyu
Chen, Yuwen
Gu, Hanxue
Konz, Nicholas
Chen, Yaqian
Li, Qihang
Mazurowski, Maciej A.
Image and Video Processing
Artificial Intelligence
Computer Vision and Pattern Recognition
Machine Learning
The widespread use of Magnetic Resonance Imaging (MRI) in combination with deep learning shows promise for many high-impact automated diagnostic and prognostic tools. However, training new models requires large amounts of labeled data, a challenge due to high cost of precise annotations and data privacy. To address this issue, we introduce the MRI-CORE, a vision foundation model trained using more than 6 million slices from over 110 thousand MRI volumes across 18 body locations. Our experiments show notable improvements in performance over state-of-the-art methods in 13 data-restricted segmentation tasks, as well as in image classification, and zero-shot segmentation, showing the strong potential of MRI-CORE to enable data-efficient development of artificial intelligence models. We also present data on which strategies yield most useful foundation models and a novel analysis relating similarity between pre-training and downstream task data with transfer learning performance. Our model is publicly available with a permissive license.
title MRI-CORE: A Foundation Model for Magnetic Resonance Imaging
topic Image and Video Processing
Artificial Intelligence
Computer Vision and Pattern Recognition
Machine Learning
url https://arxiv.org/abs/2506.12186