Correcting systematic errors in the likelihood optimization of underdamped Langevin models of molecular dynamics trajectories
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arXiv
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| Main Authors: | Girardier, David Daniel, Vroylandt, Hadrien, Bonella, Sara, Pietrucci, Fabio |
|---|---|
| Format: | Preprint |
| Published: |
2025
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| Online Access: | |
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