ProxelGen: Generating Proteins as 3D Densities
Fuente:
arXiv
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| Main Authors: | Faltings, Felix, Stark, Hannes, Barzilay, Regina, Jaakkola, Tommi |
|---|---|
| Format: | Preprint |
| Published: |
2025
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| Subjects: | |
| Online Access: | |
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