Copertina

GPU-accelerated Modeling of Biological Regulatory Networks

Fuente: arXiv

Salvato in:

Dettagli Bibliografici
Autori principali:	Reimer, Joyce, Saha, Pranta, Chen, Chris, Dhar, Neeraj, Byrns, Brook, Rayan, Steven, Broderick, Gordon
Natura:	Preprint
Pubblicazione:	2025
Soggetti:	Molecular Networks Performance Optimization and Control Quantitative Methods
Accesso online:	Acceder al recurso
Tags:	Aggiungi Tag Nessun Tag, puoi essere il primo ad aggiungerne!!

Documenti analoghi

Reconstructing Biological Pathways by Applying Selective Incremental Learning to (Very) Small Language Models
di: Saha, Pranta, et al.
Pubblicazione: (2025)

KINDLE: Knowledge-Guided Distillation for Prior-Free Gene Regulatory Network Inference
di: Peng, Rui, et al.
Pubblicazione: (2025)

GRiNS: A Python Library for Simulating Gene Regulatory Network Dynamics
di: Harlapur, Pradyumna, et al.
Pubblicazione: (2025)

Markovian Promoter Models: A Mechanistic Alternative to Hill Functions in Gene Regulatory Networks
di: Wu, Tianyu
Pubblicazione: (2025)

Identifying Protein Co-regulatory Network Logic by Solving B-SAT Problems through Gate-based Quantum Computing
di: Brisebois, Aspen Erlandsson, et al.
Pubblicazione: (2025)

BioCode: A Data-Driven Procedure to Learn the Growth of Biological Networks
di: Sefer, Emre
Pubblicazione: (2021)

Modularity Emerges from Action-Functional Constraints in Marine Metabolic Networks: A Biology-Scale Validation of the Network-Weighted Action Principle
di: Frasch, Martin G.
Pubblicazione: (2026)

Moment-based parameter inference with error guarantees for stochastic reaction networks
di: Li, Zekai, et al.
Pubblicazione: (2024)

Weak Independence and Coupled Parallelism in Biological Petri Nets
di: Simao, Eugenio
Pubblicazione: (2025)

Gene Regulatory Network Inference in the Presence of Dropouts: a Causal View
di: Dai, Haoyue, et al.
Pubblicazione: (2024)

Computing the Frequency Response of Biochemical Networks: A Python module
di: Sauro, Herbert M
Pubblicazione: (2024)

Meta-analysis and Topological Perturbation in Interactomic Network for Anti-opioid Addiction Drug Repurposing
di: Zhang, Chunhuan, et al.
Pubblicazione: (2025)

Mapping Differential Protein-Protein Interaction Networks using Affinity Purification Mass Spectrometry
di: Kaushal, Prashant, et al.
Pubblicazione: (2024)

FluxGAT: Integrating Flux Sampling with Graph Neural Networks for Unbiased Gene Essentiality Classification
di: Sharma, Kieren, et al.
Pubblicazione: (2024)

Generalized Inverse Optimal Control and its Application in Biology
di: Banga, Julio R., et al.
Pubblicazione: (2024)

Product Manifold Representations for Learning on Biological Pathways
di: McNeela, Daniel, et al.
Pubblicazione: (2024)

Practical indistinguishability in a gene regulatory network inference problem, a case study
di: FitzGerald, Cody E., et al.
Pubblicazione: (2025)

SBcoyote: An Extensible Python-Based Reaction Editor and Viewer
di: Xu, Jin, et al.
Pubblicazione: (2023)

An Update to the SBML Human-Readable Antimony Language
di: Smith, Lucian, et al.
Pubblicazione: (2024)

The evolution of systems biology and systems medicine: From mechanistic models to uncertainty quantification
di: Qiao, Lingxia, et al.
Pubblicazione: (2024)

Graph Identification of Proteins in Tomograms (GRIP-Tomo) 2.0: Topologically Aware Classification for Proteins
di: Li, Chengxuan, et al.
Pubblicazione: (2025)

A compact model of Escherichia coli core and biosynthetic metabolism
di: Corrao, Marco, et al.
Pubblicazione: (2024)

RatGene: Gene deletion-addition algorithms using growth to production ratio for growth-coupled production in constraint-based metabolic networks
di: Ma, Yier, et al.
Pubblicazione: (2024)

Systems-Level Analysis of Multisite Protein Phosphorylation: Mathematical Induction, Geometric Series, and Entropy
di: Tavassoly, Iman, et al.
Pubblicazione: (2025)

Transcriptome and Redox Proteome Reveal Temporal Scales of Carbon Metabolism Regulation in Model Cyanobacteria Under Light Disturbance
di: Johnson, Connah G. M., et al.
Pubblicazione: (2024)

Prediction of source nutrients for microorganisms using metabolic networks
di: Bulka, Olivia, et al.
Pubblicazione: (2026)

A Sensitivity Analysis Methodology for Rule-Based Stochastic Chemical Systems
di: Machado, Erika M. Herrera, et al.
Pubblicazione: (2025)

Hierarchical Preemption: A Novel Information-Theoretic Control Mechanism in Lambda Phage Decision-Making
di: Simao, Eugenio
Pubblicazione: (2025)

Negative feedback and oscillations in a model for mRNA translation
di: Ehrman, Aliza, et al.
Pubblicazione: (2025)

Modelling and calibration of pair-rule protein patterns in Drosophila embryo: From Even-skipped and Fushi-tarazu to Wingless expression networks
di: Dias, Catarina, et al.
Pubblicazione: (2024)

Quantifying energy landscape of high-dimensional oscillatory systems by diffusion decomposition
di: Bian, Shirui, et al.
Pubblicazione: (2024)

Resource competition in Three-gene-motif & Emergence of Feed-forward response: A Spatiotemporal Study
di: Chakraborty, Priya, et al.
Pubblicazione: (2022)

Spatial modeling algorithms for reactions and transport (SMART) in biological cells
di: Francis, Emmet A., et al.
Pubblicazione: (2024)

CANA v1.0.0 and schematodes: efficient quantification of symmetry in Boolean automata
di: Marcus, Austin M., et al.
Pubblicazione: (2024)

Quantitative Aspects, Engineering and Optimization of Bacterial Sensor Systems
di: Anderl, Florian, et al.
Pubblicazione: (2024)

Inferring gene regulation dynamics from static snapshots of gene expression variability
di: Joly-Smith, Euan, et al.
Pubblicazione: (2021)

Sampling from the Solution Space and Metabolic Environments of Genome-Scale Metabolic Models
di: Zafeiropoulos, Haris, et al.
Pubblicazione: (2026)

GenAI-Net: A Generative AI Framework for Automated Biomolecular Network Design
di: Filo, Maurice, et al.
Pubblicazione: (2026)

A Novel Graph Transformer Framework for Gene Regulatory Network Inference
di: Teji, Binon, et al.
Pubblicazione: (2025)

On Quantum Random Walks in Biomolecular Networks
di: Dubovitskii, Viacheslav, et al.
Pubblicazione: (2025)