inMOTIFin: a lightweight end-to-end simulation software for regulatory sequences
Fuente:
arXiv
Saved in:
| Main Authors: | Ferenc, Katalin, Martini, Lorenzo, Rauluseviciute, Ieva, Sandve, Geir Kjetil, Mathelier, Anthony |
|---|---|
| Format: | Preprint |
| Published: |
2025
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
CAVACHON: a hierarchical variational autoencoder to integrate multi-modal single-cell data
by: Hsieh, Ping-Han, et al.
Published: (2024)
by: Hsieh, Ping-Han, et al.
Published: (2024)
Perspective on recent developments and challenges in regulatory and systems genomics
by: Zeiltinger, Julia, et al.
Published: (2024)
by: Zeiltinger, Julia, et al.
Published: (2024)
BHiCect 2.0: Multi-resolution clustering of Hi-C data
by: Kumar, Vipin, et al.
Published: (2025)
by: Kumar, Vipin, et al.
Published: (2025)
Benchmarking end-to-end genotype-to-phenotype prediction workflows across 80 openSNP phenotypes
by: Muneeb, Muhammad, et al.
Published: (2026)
by: Muneeb, Muhammad, et al.
Published: (2026)
Phenotypic divergence of Homo sapiens is driven by the evolution of human-specific genomic regulatory networks via two mechanistically distinct pathways of creation of divergent regulatory DNA sequences
by: Glinsky, Gennadi
Published: (2015)
by: Glinsky, Gennadi
Published: (2015)
Genetic control of wheat flour end‐use quality and rheology by genome‐wide association studies
by: Juan Menor de Gaspar, et al.
Published: (2026)
by: Juan Menor de Gaspar, et al.
Published: (2026)
Association mapping and genomic prediction for processing and end‐use quality traits in wheat ( Triticum aestivum L.)
by: Harsimardeep S. Gill, et al.
Published: (2024)
by: Harsimardeep S. Gill, et al.
Published: (2024)
Analysis of evolutionary origins of genomic loci harboring 59,732 candidate human-specific regulatory sequences identifies genetic divergence patterns during evolution of Great Apes
by: Glinsky, Gennadi
Published: (2018)
by: Glinsky, Gennadi
Published: (2018)
Approximating a gene regulatory network from non-sequential data
by: Stein, Cliff, et al.
Published: (2024)
by: Stein, Cliff, et al.
Published: (2024)
Identification and characterization of unique to human regulatory sequences in embryonic stem cells reveal associations with transposable elements, distal enhancers, non-coding RNA, and DNA methylation-driven mechanisms of genome editing
by: Glinsky, Gennadi
Published: (2014)
by: Glinsky, Gennadi
Published: (2014)
Dbcanlight: a lightweight CAZyme annotation tool
by: Tsai, Cheng-Hung, et al.
Published: (2025)
by: Tsai, Cheng-Hung, et al.
Published: (2025)
A genomic dominion with regulatory dependencies on human-specific single-nucleotide changes in Modern Humans
by: Glinsky, Gennadi V.
Published: (2019)
by: Glinsky, Gennadi V.
Published: (2019)
Complete genome sequence of Lysinibacillus sp. WB86, a potential antimicrobial lanthipeptides producer.
by: Sun, Huai-Ying, et al.
Published: (2025)
by: Sun, Huai-Ying, et al.
Published: (2025)
Integrated GWAS and Fst analysis identify flowering‐time regulatory genes in maize
by: Dong Wang, et al.
Published: (2026)
by: Dong Wang, et al.
Published: (2026)
An algorithm to align a chain of sequences to paths in a pangenome graph
by: Solun, Gorkem Kadir, et al.
Published: (2025)
by: Solun, Gorkem Kadir, et al.
Published: (2025)
Genome sequence of a marine threespine stickleback (Gasterosteus aculeatus) from Rabbit Slough in the Cook Inlet.
by: Au, Eric H, et al.
Published: (2025)
by: Au, Eric H, et al.
Published: (2025)
A mechanistically interpretable neural network for regulatory genomics
by: Tseng, Alex M., et al.
Published: (2024)
by: Tseng, Alex M., et al.
Published: (2024)
Finding low-complexity DNA sequences with longdust
by: Li, Heng, et al.
Published: (2025)
by: Li, Heng, et al.
Published: (2025)
The use of next-generation sequencing in personalized medicine
by: Popova, Liya, et al.
Published: (2024)
by: Popova, Liya, et al.
Published: (2024)
Btrim: A fast, lightweight adapter and quality trimming program for next-generation sequencing technologies
by: Kong, Yong
Published: (2014)
by: Kong, Yong
Published: (2014)
Addressing missing context in regulatory variation across primate evolution
by: Housman, Genevieve, et al.
Published: (2025)
by: Housman, Genevieve, et al.
Published: (2025)
Approaches for benchmarking single-cell gene regulatory network inference methods
by: Uzun, Yasin
Published: (2023)
by: Uzun, Yasin
Published: (2023)
Deciphering regulatory architectures from synthetic single-cell expression patterns
by: Pan, Rosalind Wenshan, et al.
Published: (2024)
by: Pan, Rosalind Wenshan, et al.
Published: (2024)
Complete genome sequence of the marine mangrove fungus Sarcopodium sp.QM3-1 confirmed its high potential for antimicrobial activity.
by: Zhang, Wenzhou, et al.
Published: (2025)
by: Zhang, Wenzhou, et al.
Published: (2025)
Y-Trim: Evidence-gated Adaptase tail trimming for single-stranded bisulfite sequencing
by: Fang, Yihan
Published: (2026)
by: Fang, Yihan
Published: (2026)
A mapping-free NLP-based technique for sequence search in Nanopore long-reads
by: Strzoda, Tomasz, et al.
Published: (2024)
by: Strzoda, Tomasz, et al.
Published: (2024)
SAGE-FM: A lightweight and interpretable spatial transcriptomics foundation model
by: Zhan, Xianghao, et al.
Published: (2026)
by: Zhan, Xianghao, et al.
Published: (2026)
Evaluation of simulation methods for tumor subclonal reconstruction
by: Lai, Jiaying, et al.
Published: (2024)
by: Lai, Jiaying, et al.
Published: (2024)
Nephrobase Cell+: Multimodal Single-Cell Foundation Model for Decoding Kidney Biology
by: Li, Chenyu, et al.
Published: (2025)
by: Li, Chenyu, et al.
Published: (2025)
grenepipe: A flexible, scalable, and reproducible pipeline to automate variant and frequency calling from sequence reads
by: Czech, Lucas, et al.
Published: (2021)
by: Czech, Lucas, et al.
Published: (2021)
Use of 3D chaos game representation to quantify DNA sequence similarity with applications for hierarchical clustering
by: Young, Stephanie, et al.
Published: (2024)
by: Young, Stephanie, et al.
Published: (2024)
Genomics-guided drawing of malignant regulatory signatures revealed a pivotal role of human stem cell-associated retroviral sequences (SCARS) and functionally-active hESC enhancers
by: Glinsky, Gennadi
Published: (2020)
by: Glinsky, Gennadi
Published: (2020)
SNPgen: Phenotype-Supervised Genotype Representation and Synthetic Data Generation via Latent Diffusion
by: Lampis, Andrea, et al.
Published: (2026)
by: Lampis, Andrea, et al.
Published: (2026)
AMRScan: A hybrid R and Nextflow toolkit for rapid antimicrobial resistance gene detection from sequencing data
by: Lai, Kaitao
Published: (2025)
by: Lai, Kaitao
Published: (2025)
An improved, high yield method for isolating nuclei from individual zebrafish embryos for single-nucleus RNA sequencing
by: Rostomily, Clifford, et al.
Published: (2024)
by: Rostomily, Clifford, et al.
Published: (2024)
PASS: De novo assembler for short peptide sequences
by: Warren, René L.
Published: (2022)
by: Warren, René L.
Published: (2022)
The draft genome sequences of the cosmopolitan centric diatom, the genus Skeletonema.
by: Nagai, Satoshi, et al.
Published: (2025)
by: Nagai, Satoshi, et al.
Published: (2025)
The Canadian VirusSeq Data Portal & Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology
by: Gill, Erin E., et al.
Published: (2024)
by: Gill, Erin E., et al.
Published: (2024)
A low‐coverage skim‐sequencing and imputation pipeline for genomic selection
by: Sajal R. Sthapit, et al.
Published: (2025)
by: Sajal R. Sthapit, et al.
Published: (2025)
The complete genome sequence of Acinetobacter sp. P1332, a tetrodotoxin-producing bacteria.
by: Liang, Liyun, et al.
Published: (2025)
by: Liang, Liyun, et al.
Published: (2025)
Similar Items
-
CAVACHON: a hierarchical variational autoencoder to integrate multi-modal single-cell data
by: Hsieh, Ping-Han, et al.
Published: (2024) -
Perspective on recent developments and challenges in regulatory and systems genomics
by: Zeiltinger, Julia, et al.
Published: (2024) -
BHiCect 2.0: Multi-resolution clustering of Hi-C data
by: Kumar, Vipin, et al.
Published: (2025) -
Benchmarking end-to-end genotype-to-phenotype prediction workflows across 80 openSNP phenotypes
by: Muneeb, Muhammad, et al.
Published: (2026) -
Phenotypic divergence of Homo sapiens is driven by the evolution of human-specific genomic regulatory networks via two mechanistically distinct pathways of creation of divergent regulatory DNA sequences
by: Glinsky, Gennadi
Published: (2015)