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Main Authors: Badreddine, Samy, van Krieken, Emile, Serafini, Luciano
Format: Preprint
Published: 2025
Subjects:
Online Access:https://arxiv.org/abs/2506.22271
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author Badreddine, Samy
van Krieken, Emile
Serafini, Luciano
author_facet Badreddine, Samy
van Krieken, Emile
Serafini, Luciano
contents Neural networks often map low-dimensional embeddings to high-dimensional output spaces. Usually, the output layer is linear, which can create a "rank bottleneck" that limits the functions a model can represent. Such bottlenecks are ubiquitous in link prediction models, such as knowledge graph embeddings (KGEs), as the output space of entities can be orders of magnitude larger than the embedding dimension. We investigate how rank bottlenecks limit model expressivity for fitting the training data. While previous work focused on sufficient bounds on the embedding dimension required for specific KGEs, we show necessary bounds for all KGEs with a linear output layer, which grow with graph size and connectivity. We also consider a non-linear output layer using mixtures to break the bottleneck without significant parameter overhead. Empirically, we show that models using this non-linear layer improve in ranking performance and probabilistic fit for large and dense datasets at a low parameter cost, as predicted by our theory. Our work reveals how linear output layers limit KGEs and motivates non-linear alternatives for scaling to large and dense graphs.
format Preprint
id arxiv_https___arxiv_org_abs_2506_22271
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle On the Theoretical Limitations of Embedding-based Link Prediction
Badreddine, Samy
van Krieken, Emile
Serafini, Luciano
Artificial Intelligence
Machine Learning
Neural networks often map low-dimensional embeddings to high-dimensional output spaces. Usually, the output layer is linear, which can create a "rank bottleneck" that limits the functions a model can represent. Such bottlenecks are ubiquitous in link prediction models, such as knowledge graph embeddings (KGEs), as the output space of entities can be orders of magnitude larger than the embedding dimension. We investigate how rank bottlenecks limit model expressivity for fitting the training data. While previous work focused on sufficient bounds on the embedding dimension required for specific KGEs, we show necessary bounds for all KGEs with a linear output layer, which grow with graph size and connectivity. We also consider a non-linear output layer using mixtures to break the bottleneck without significant parameter overhead. Empirically, we show that models using this non-linear layer improve in ranking performance and probabilistic fit for large and dense datasets at a low parameter cost, as predicted by our theory. Our work reveals how linear output layers limit KGEs and motivates non-linear alternatives for scaling to large and dense graphs.
title On the Theoretical Limitations of Embedding-based Link Prediction
topic Artificial Intelligence
Machine Learning
url https://arxiv.org/abs/2506.22271