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| Main Authors: | , , |
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| Format: | Preprint |
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2025
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| Online Access: | https://arxiv.org/abs/2507.02006 |
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| _version_ | 1866909981906829312 |
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| author | Jayakody, Shakya Zhao, Youpeng Wang, Jun |
| author_facet | Jayakody, Shakya Zhao, Youpeng Wang, Jun |
| contents | Graph convolutional networks (GCNs) are fundamental in various scientific applications, ranging from biomedical protein-protein interactions (PPI) to large-scale recommendation systems. An essential component for modeling graph structures in GCNs is sparse general matrix-matrix multiplication (SpGEMM). As the size of graph data continues to scale up, SpGEMMs are often conducted in an out-of-core fashion due to limited GPU memory space in resource-constrained systems. Albeit recent efforts that aim to alleviate the memory constraints of out-of-core SpGEMM through either GPU feature caching, hybrid CPU-GPU memory layout, or performing the computation in sparse format, current systems suffer from both high I/O latency and GPU under-utilization issues.
In this paper, we first identify the problems of existing systems, where sparse format data alignment and memory allocation are the main performance bottlenecks, and propose AIRES, a novel algorithm-system co-design solution to accelerate out-of-core SpGEMM computation for GCNs. Specifically, from the algorithm angle, AIRES proposes to alleviate the data alignment issues on the block level for matrices in sparse formats and develops a tiling algorithm to facilitate row block-wise alignment. On the system level, AIRES employs a three-phase dynamic scheduling that features a dual-way data transfer strategy utilizing a tiered memory system: integrating GPU memory, GPU Direct Storage (GDS), and host memory to reduce I/O latency and improve throughput. Evaluations show that AIRES significantly outperforms the state-of-the-art methods, achieving up to 1.8x lower latency in real-world graph processing benchmarks. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2507_02006 |
| institution | arXiv |
| publishDate | 2025 |
| record_format | arxiv |
| spellingShingle | AIRES: Accelerating Out-of-Core GCNs via Algorithm-System Co-Design Jayakody, Shakya Zhao, Youpeng Wang, Jun Machine Learning Graph convolutional networks (GCNs) are fundamental in various scientific applications, ranging from biomedical protein-protein interactions (PPI) to large-scale recommendation systems. An essential component for modeling graph structures in GCNs is sparse general matrix-matrix multiplication (SpGEMM). As the size of graph data continues to scale up, SpGEMMs are often conducted in an out-of-core fashion due to limited GPU memory space in resource-constrained systems. Albeit recent efforts that aim to alleviate the memory constraints of out-of-core SpGEMM through either GPU feature caching, hybrid CPU-GPU memory layout, or performing the computation in sparse format, current systems suffer from both high I/O latency and GPU under-utilization issues. In this paper, we first identify the problems of existing systems, where sparse format data alignment and memory allocation are the main performance bottlenecks, and propose AIRES, a novel algorithm-system co-design solution to accelerate out-of-core SpGEMM computation for GCNs. Specifically, from the algorithm angle, AIRES proposes to alleviate the data alignment issues on the block level for matrices in sparse formats and develops a tiling algorithm to facilitate row block-wise alignment. On the system level, AIRES employs a three-phase dynamic scheduling that features a dual-way data transfer strategy utilizing a tiered memory system: integrating GPU memory, GPU Direct Storage (GDS), and host memory to reduce I/O latency and improve throughput. Evaluations show that AIRES significantly outperforms the state-of-the-art methods, achieving up to 1.8x lower latency in real-world graph processing benchmarks. |
| title | AIRES: Accelerating Out-of-Core GCNs via Algorithm-System Co-Design |
| topic | Machine Learning |
| url | https://arxiv.org/abs/2507.02006 |