Roadmap for using large language models (LLMs) to accelerate cross-disciplinary research with an example from computational biology

Fuente: arXiv
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Autori principali: Ke, Ruian, Ribeiro, Ruy M.
Natura: Preprint
Pubblicazione: 2025
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author Ke, Ruian
Ribeiro, Ruy M.
author_facet Ke, Ruian
Ribeiro, Ruy M.
contents Large language models (LLMs) are powerful artificial intelligence (AI) tools transforming how research is conducted. However, their use in research has been met with skepticism, due to concerns about hallucinations, biases and potential harms to research. These emphasize the importance of clearly understanding the strengths and weaknesses of LLMs to ensure their effective and responsible use. Here, we present a roadmap for integrating LLMs into cross-disciplinary research, where effective communication, knowledge transfer and collaboration across diverse fields are essential but often challenging. We examine the capabilities and limitations of LLMs and provide a detailed computational biology case study (on modeling HIV rebound dynamics) demonstrating how iterative interactions with an LLM (ChatGPT) can facilitate interdisciplinary collaboration and research. We argue that LLMs are best used as augmentative tools within a human-in-the-loop framework. Looking forward, we envisage that the responsible use of LLMs will enhance innovative cross-disciplinary research and substantially accelerate scientific discoveries.
format Preprint
id arxiv_https___arxiv_org_abs_2507_03722
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle Roadmap for using large language models (LLMs) to accelerate cross-disciplinary research with an example from computational biology
Ke, Ruian
Ribeiro, Ruy M.
Artificial Intelligence
Other Quantitative Biology
Large language models (LLMs) are powerful artificial intelligence (AI) tools transforming how research is conducted. However, their use in research has been met with skepticism, due to concerns about hallucinations, biases and potential harms to research. These emphasize the importance of clearly understanding the strengths and weaknesses of LLMs to ensure their effective and responsible use. Here, we present a roadmap for integrating LLMs into cross-disciplinary research, where effective communication, knowledge transfer and collaboration across diverse fields are essential but often challenging. We examine the capabilities and limitations of LLMs and provide a detailed computational biology case study (on modeling HIV rebound dynamics) demonstrating how iterative interactions with an LLM (ChatGPT) can facilitate interdisciplinary collaboration and research. We argue that LLMs are best used as augmentative tools within a human-in-the-loop framework. Looking forward, we envisage that the responsible use of LLMs will enhance innovative cross-disciplinary research and substantially accelerate scientific discoveries.
title Roadmap for using large language models (LLMs) to accelerate cross-disciplinary research with an example from computational biology
topic Artificial Intelligence
Other Quantitative Biology
url https://arxiv.org/abs/2507.03722