Evaluation of Coding Schemes for Transformer-based Gene Sequence Modeling
Fuente:
arXiv
Saved in:
| Main Authors: | Gong, Chenlei, Tian, Yuanhe, Mao, Lei, Song, Yan |
|---|---|
| Format: | Preprint |
| Published: |
2025
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
DNAZEN: Enhanced Gene Sequence Representations via Mixed Granularities of Coding Units
by: Mao, Lei, et al.
Published: (2025)
by: Mao, Lei, et al.
Published: (2025)
Detoxification of Large Language Models through Output-layer Fusion with a Calibration Model
by: Tian, Yuanhe, et al.
Published: (2025)
by: Tian, Yuanhe, et al.
Published: (2025)
Recurrent Visual Feature Extraction and Stereo Attentions for CT Report Generation
by: Tian, Yuanhe, et al.
Published: (2025)
by: Tian, Yuanhe, et al.
Published: (2025)
Clip Your Sequences Fairly: Enforcing Length Fairness for Sequence-Level RL
by: Mao, Hanyi, et al.
Published: (2025)
by: Mao, Hanyi, et al.
Published: (2025)
Code-driven Number Sequence Calculation: Enhancing the inductive Reasoning Abilities of Large Language Models
by: Chen, Kedi, et al.
Published: (2025)
by: Chen, Kedi, et al.
Published: (2025)
A Review on the Applications of Transformer-based language models for Nucleotide Sequence Analysis
by: Ghosh, Nimisha, et al.
Published: (2024)
by: Ghosh, Nimisha, et al.
Published: (2024)
LIFEBench: Evaluating Length Instruction Following in Large Language Models
by: Zhang, Wei, et al.
Published: (2025)
by: Zhang, Wei, et al.
Published: (2025)
GeneSUM: Large Language Model-based Gene Summary Extraction
by: Chen, Zhijian, et al.
Published: (2024)
by: Chen, Zhijian, et al.
Published: (2024)
CriticEval: Evaluating Large Language Model as Critic
by: Lan, Tian, et al.
Published: (2024)
by: Lan, Tian, et al.
Published: (2024)
DA-Code: Agent Data Science Code Generation Benchmark for Large Language Models
by: Huang, Yiming, et al.
Published: (2024)
by: Huang, Yiming, et al.
Published: (2024)
Efficient Self-Evaluation for Diffusion Language Models via Sequence Regeneration
by: Zhong, Linhao, et al.
Published: (2026)
by: Zhong, Linhao, et al.
Published: (2026)
Natural Language Satisfiability: Exploring the Problem Distribution and Evaluating Transformer-based Language Models
by: Madusanka, Tharindu, et al.
Published: (2025)
by: Madusanka, Tharindu, et al.
Published: (2025)
SliceWorld: A Predictive and Controllable World-State Model for CT Report Generation
by: Tian, Yuanhe, et al.
Published: (2026)
by: Tian, Yuanhe, et al.
Published: (2026)
CodeApex: A Bilingual Programming Evaluation Benchmark for Large Language Models
by: Fu, Lingyue, et al.
Published: (2023)
by: Fu, Lingyue, et al.
Published: (2023)
LARFT: Closing the Cognition-Action Gap for Length Instruction Following in Large Language Models
by: Zhang, Wei, et al.
Published: (2026)
by: Zhang, Wei, et al.
Published: (2026)
CORBA: Contagious Recursive Blocking Attacks on Multi-Agent Systems Based on Large Language Models
by: Zhou, Zhenhong, et al.
Published: (2025)
by: Zhou, Zhenhong, et al.
Published: (2025)
From Sequence to Structure: Uncovering Substructure Reasoning in Transformers
by: Dai, Xinnan, et al.
Published: (2025)
by: Dai, Xinnan, et al.
Published: (2025)
Code-Vision: Evaluating Multimodal LLMs Logic Understanding and Code Generation Capabilities
by: Wang, Hanbin, et al.
Published: (2025)
by: Wang, Hanbin, et al.
Published: (2025)
DynaCode: A Dynamic Complexity-Aware Code Benchmark for Evaluating Large Language Models in Code Generation
by: Hu, Wenhao, et al.
Published: (2025)
by: Hu, Wenhao, et al.
Published: (2025)
MEND: Meta dEmonstratioN Distillation for Efficient and Effective In-Context Learning
by: Li, Yichuan, et al.
Published: (2024)
by: Li, Yichuan, et al.
Published: (2024)
FinRpt: Dataset, Evaluation System and LLM-based Multi-agent Framework for Equity Research Report Generation
by: Jin, Song, et al.
Published: (2025)
by: Jin, Song, et al.
Published: (2025)
Grouped Sequency-arranged Rotation: Optimizing Rotation Transformation for Quantization for Free
by: Choi, Euntae, et al.
Published: (2025)
by: Choi, Euntae, et al.
Published: (2025)
MM-CRITIC: A Holistic Evaluation of Large Multimodal Models as Multimodal Critique
by: Zeng, Gailun, et al.
Published: (2025)
by: Zeng, Gailun, et al.
Published: (2025)
Enhancing RWKV-based Language Models for Long-Sequence Text Generation
by: Pan, Xinghan
Published: (2025)
by: Pan, Xinghan
Published: (2025)
Advancing Language Models for Code-related Tasks
by: Tian, Zhao
Published: (2026)
by: Tian, Zhao
Published: (2026)
CodeEvo: Interaction-Driven Synthesis of Code-centric Data through Hybrid and Iterative Feedback
by: Sun, Qiushi, et al.
Published: (2025)
by: Sun, Qiushi, et al.
Published: (2025)
Learning to Prioritize IT Tickets: A Comparative Evaluation of Embedding-based Approaches and Fine-Tuned Transformer Models
by: LÊ, Minh Tri, et al.
Published: (2025)
by: LÊ, Minh Tri, et al.
Published: (2025)
SASQ: Static Activation Scaling for Quantization-Aware Training in Large Language Models
by: Mao, Shizhuo, et al.
Published: (2025)
by: Mao, Shizhuo, et al.
Published: (2025)
Sequence to Sequence Reward Modeling: Improving RLHF by Language Feedback
by: Zhou, Jiayi, et al.
Published: (2024)
by: Zhou, Jiayi, et al.
Published: (2024)
CodeMind: Evaluating Large Language Models for Code Reasoning
by: Liu, Changshu, et al.
Published: (2024)
by: Liu, Changshu, et al.
Published: (2024)
A Comparative Study on Code Generation with Transformers
by: Das, Namrata, et al.
Published: (2024)
by: Das, Namrata, et al.
Published: (2024)
RefineCoder: Iterative Improving of Large Language Models via Adaptive Critique Refinement for Code Generation
by: Zhou, Changzhi, et al.
Published: (2025)
by: Zhou, Changzhi, et al.
Published: (2025)
From Word Sequences to Behavioral Sequences: Adapting Modeling and Evaluation Paradigms for Longitudinal NLP
by: Ganesan, Adithya V, et al.
Published: (2026)
by: Ganesan, Adithya V, et al.
Published: (2026)
CodeGemma: Open Code Models Based on Gemma
by: CodeGemma Team, et al.
Published: (2024)
by: CodeGemma Team, et al.
Published: (2024)
CodeScope: An Execution-based Multilingual Multitask Multidimensional Benchmark for Evaluating LLMs on Code Understanding and Generation
by: Yan, Weixiang, et al.
Published: (2023)
by: Yan, Weixiang, et al.
Published: (2023)
ConsintBench: Evaluating Language Models on Real-World Consumer Intent Understanding
by: Li, Xiaozhe, et al.
Published: (2025)
by: Li, Xiaozhe, et al.
Published: (2025)
ReflectionCoder: Learning from Reflection Sequence for Enhanced One-off Code Generation
by: Ren, Houxing, et al.
Published: (2024)
by: Ren, Houxing, et al.
Published: (2024)
Sequence-to-Sequence Language Models for Character and Emotion Detection in Dream Narratives
by: Cortal, Gustave
Published: (2024)
by: Cortal, Gustave
Published: (2024)
Simulating Weighted Automata over Sequences and Trees with Transformers
by: Rizvi, Michael, et al.
Published: (2024)
by: Rizvi, Michael, et al.
Published: (2024)
GeneAgent: Self-verification Language Agent for Gene Set Knowledge Discovery using Domain Databases
by: Wang, Zhizheng, et al.
Published: (2024)
by: Wang, Zhizheng, et al.
Published: (2024)
Similar Items
-
DNAZEN: Enhanced Gene Sequence Representations via Mixed Granularities of Coding Units
by: Mao, Lei, et al.
Published: (2025) -
Detoxification of Large Language Models through Output-layer Fusion with a Calibration Model
by: Tian, Yuanhe, et al.
Published: (2025) -
Recurrent Visual Feature Extraction and Stereo Attentions for CT Report Generation
by: Tian, Yuanhe, et al.
Published: (2025) -
Clip Your Sequences Fairly: Enforcing Length Fairness for Sequence-Level RL
by: Mao, Hanyi, et al.
Published: (2025) -
Code-driven Number Sequence Calculation: Enhancing the inductive Reasoning Abilities of Large Language Models
by: Chen, Kedi, et al.
Published: (2025)