Use as Directed? A Comparison of Software Tools Intended to Check Rigor and Transparency of Published Work

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Main Authors: Eckmann, Peter, Barnett, Adrian, Bannach-Brown, Alexandra, Atria, Elisa Pilar Bascunan, Cabanac, Guillaume, Franzen, Louise Delwen Owen, Gazda, Małgorzata Anna, Hair, Kaitlyn, Howison, James, Kilicoglu, Halil, Labbe, Cyril, McCann, Sarah, Nachev, Vladislav, Roelandse, Martijn, Salholz-Hillel, Maia, Schulz, Robert, ter Riet, Gerben, Vorland, Colby, Bandrowski, Anita, Weissgerber, Tracey
Format: Preprint
Published: 2025
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author Eckmann, Peter
Barnett, Adrian
Bannach-Brown, Alexandra
Atria, Elisa Pilar Bascunan
Cabanac, Guillaume
Franzen, Louise Delwen Owen
Gazda, Małgorzata Anna
Hair, Kaitlyn
Howison, James
Kilicoglu, Halil
Labbe, Cyril
McCann, Sarah
Nachev, Vladislav
Roelandse, Martijn
Salholz-Hillel, Maia
Schulz, Robert
ter Riet, Gerben
Vorland, Colby
Bandrowski, Anita
Weissgerber, Tracey
author_facet Eckmann, Peter
Barnett, Adrian
Bannach-Brown, Alexandra
Atria, Elisa Pilar Bascunan
Cabanac, Guillaume
Franzen, Louise Delwen Owen
Gazda, Małgorzata Anna
Hair, Kaitlyn
Howison, James
Kilicoglu, Halil
Labbe, Cyril
McCann, Sarah
Nachev, Vladislav
Roelandse, Martijn
Salholz-Hillel, Maia
Schulz, Robert
ter Riet, Gerben
Vorland, Colby
Bandrowski, Anita
Weissgerber, Tracey
contents The causes of the reproducibility crisis include lack of standardization and transparency in scientific reporting. Checklists such as ARRIVE and CONSORT seek to improve transparency, but they are not always followed by authors and peer review often fails to identify missing items. To address these issues, there are several automated tools that have been designed to check different rigor criteria. We have conducted a broad comparison of 11 automated tools across 9 different rigor criteria from the ScreenIT group. We found some criteria, including detecting open data, where the combination of tools showed a clear winner, a tool which performed much better than other tools. In other cases, including detection of inclusion and exclusion criteria, the combination of tools exceeded the performance of any one tool. We also identified key areas where tool developers should focus their effort to make their tool maximally useful. We conclude with a set of insights and recommendations for stakeholders in the development of rigor and transparency detection tools. The code and data for the study is available at https://github.com/PeterEckmann1/tool-comparison.
format Preprint
id arxiv_https___arxiv_org_abs_2507_17991
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle Use as Directed? A Comparison of Software Tools Intended to Check Rigor and Transparency of Published Work
Eckmann, Peter
Barnett, Adrian
Bannach-Brown, Alexandra
Atria, Elisa Pilar Bascunan
Cabanac, Guillaume
Franzen, Louise Delwen Owen
Gazda, Małgorzata Anna
Hair, Kaitlyn
Howison, James
Kilicoglu, Halil
Labbe, Cyril
McCann, Sarah
Nachev, Vladislav
Roelandse, Martijn
Salholz-Hillel, Maia
Schulz, Robert
ter Riet, Gerben
Vorland, Colby
Bandrowski, Anita
Weissgerber, Tracey
Software Engineering
Information Retrieval
The causes of the reproducibility crisis include lack of standardization and transparency in scientific reporting. Checklists such as ARRIVE and CONSORT seek to improve transparency, but they are not always followed by authors and peer review often fails to identify missing items. To address these issues, there are several automated tools that have been designed to check different rigor criteria. We have conducted a broad comparison of 11 automated tools across 9 different rigor criteria from the ScreenIT group. We found some criteria, including detecting open data, where the combination of tools showed a clear winner, a tool which performed much better than other tools. In other cases, including detection of inclusion and exclusion criteria, the combination of tools exceeded the performance of any one tool. We also identified key areas where tool developers should focus their effort to make their tool maximally useful. We conclude with a set of insights and recommendations for stakeholders in the development of rigor and transparency detection tools. The code and data for the study is available at https://github.com/PeterEckmann1/tool-comparison.
title Use as Directed? A Comparison of Software Tools Intended to Check Rigor and Transparency of Published Work
topic Software Engineering
Information Retrieval
url https://arxiv.org/abs/2507.17991