EnTao-GPM: DNA Foundation Model for Predicting the Germline Pathogenic Mutations
Fuente:
arXiv
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| Main Authors: | Lin, Zekai, Sun, Haoran, Guo, Yucheng, Yang, Yujie, Wang, Yanwen, Hu, Bozhen, Ye, Chonghang, Yang, Qirong, Zhong, Fan, Zhang, Xiaoming, Liu, Lei |
|---|---|
| Format: | Preprint |
| Published: |
2025
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| Subjects: | |
| Online Access: | |
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