Medical Image De-Identification Resources: Synthetic DICOM Data and Tools for Validation
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| Main Authors: | , , , , , , , , , , , , |
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| Format: | Preprint |
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2025
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| _version_ | 1866911088949329920 |
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| author | Rutherford, Michael W. Nolan, Tracy Pei, Linmin Wagner, Ulrike Pan, Qinyan Farmer, Phillip Smith, Kirk Kopchick, Benjamin Opsahl-Ong, Laura Sutton, Granger Clunie, David Farahani, Keyvan Prior, Fred |
| author_facet | Rutherford, Michael W. Nolan, Tracy Pei, Linmin Wagner, Ulrike Pan, Qinyan Farmer, Phillip Smith, Kirk Kopchick, Benjamin Opsahl-Ong, Laura Sutton, Granger Clunie, David Farahani, Keyvan Prior, Fred |
| contents | Medical imaging research increasingly depends on large-scale data sharing to promote reproducibility and train Artificial Intelligence (AI) models. Ensuring patient privacy remains a significant challenge for open-access data sharing. Digital Imaging and Communications in Medicine (DICOM), the global standard data format for medical imaging, encodes both essential clinical metadata and extensive protected health information (PHI) and personally identifiable information (PII). Effective de-identification must remove identifiers, preserve scientific utility, and maintain DICOM validity. Tools exist to perform de-identification, but few assess its effectiveness, and most rely on subjective reviews, limiting reproducibility and regulatory confidence. To address this gap, we developed an openly accessible DICOM dataset infused with synthetic PHI/PII and an evaluation framework for benchmarking image de-identification workflows. The Medical Image de-identification (MIDI) dataset was built using publicly available de-identified data from The Cancer Imaging Archive (TCIA). It includes 538 subjects (216 for validation, 322 for testing), 605 studies, 708 series, and 53,581 DICOM image instances. These span multiple vendors, imaging modalities, and cancer types. Synthetic PHI and PII were embedded into structured data elements, plain text data elements, and pixel data to simulate real-world identity leaks encountered by TCIA curation teams. Accompanying evaluation tools include a Python script, answer keys (known truth), and mapping files that enable automated comparison of curated data against expected transformations. The framework is aligned with the HIPAA Privacy Rule "Safe Harbor" method, DICOM PS3.15 Confidentiality Profiles, and TCIA best practices. It supports objective, standards-driven evaluation of de-identification workflows, promoting safer and more consistent medical image sharing. |
| format | Preprint |
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arxiv_https___arxiv_org_abs_2508_01889 |
| institution | arXiv |
| publishDate | 2025 |
| record_format | arxiv |
| spellingShingle | Medical Image De-Identification Resources: Synthetic DICOM Data and Tools for Validation Rutherford, Michael W. Nolan, Tracy Pei, Linmin Wagner, Ulrike Pan, Qinyan Farmer, Phillip Smith, Kirk Kopchick, Benjamin Opsahl-Ong, Laura Sutton, Granger Clunie, David Farahani, Keyvan Prior, Fred Computer Vision and Pattern Recognition Medical imaging research increasingly depends on large-scale data sharing to promote reproducibility and train Artificial Intelligence (AI) models. Ensuring patient privacy remains a significant challenge for open-access data sharing. Digital Imaging and Communications in Medicine (DICOM), the global standard data format for medical imaging, encodes both essential clinical metadata and extensive protected health information (PHI) and personally identifiable information (PII). Effective de-identification must remove identifiers, preserve scientific utility, and maintain DICOM validity. Tools exist to perform de-identification, but few assess its effectiveness, and most rely on subjective reviews, limiting reproducibility and regulatory confidence. To address this gap, we developed an openly accessible DICOM dataset infused with synthetic PHI/PII and an evaluation framework for benchmarking image de-identification workflows. The Medical Image de-identification (MIDI) dataset was built using publicly available de-identified data from The Cancer Imaging Archive (TCIA). It includes 538 subjects (216 for validation, 322 for testing), 605 studies, 708 series, and 53,581 DICOM image instances. These span multiple vendors, imaging modalities, and cancer types. Synthetic PHI and PII were embedded into structured data elements, plain text data elements, and pixel data to simulate real-world identity leaks encountered by TCIA curation teams. Accompanying evaluation tools include a Python script, answer keys (known truth), and mapping files that enable automated comparison of curated data against expected transformations. The framework is aligned with the HIPAA Privacy Rule "Safe Harbor" method, DICOM PS3.15 Confidentiality Profiles, and TCIA best practices. It supports objective, standards-driven evaluation of de-identification workflows, promoting safer and more consistent medical image sharing. |
| title | Medical Image De-Identification Resources: Synthetic DICOM Data and Tools for Validation |
| topic | Computer Vision and Pattern Recognition |
| url | https://arxiv.org/abs/2508.01889 |