Unmasking Interstitial Lung Diseases: Leveraging Masked Autoencoders for Diagnosis

Fuente: arXiv
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Autores principales: Dack, Ethan, Brigato, Lorenzo, Dedousis, Vasilis, Gote-Schniering, Janine, Cheryl, Hoppe, Hanno, Exadaktylos, Aristomenis, Funke-Chambour, Manuela, Geiser, Thomas, Christe, Andreas, Ebner, Lukas, Mougiakakou, Stavroula
Formato: Preprint
Publicado: 2025
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author Dack, Ethan
Brigato, Lorenzo
Dedousis, Vasilis
Gote-Schniering, Janine
Cheryl
Hoppe, Hanno
Exadaktylos, Aristomenis
Funke-Chambour, Manuela
Geiser, Thomas
Christe, Andreas
Ebner, Lukas
Mougiakakou, Stavroula
author_facet Dack, Ethan
Brigato, Lorenzo
Dedousis, Vasilis
Gote-Schniering, Janine
Cheryl
Hoppe, Hanno
Exadaktylos, Aristomenis
Funke-Chambour, Manuela
Geiser, Thomas
Christe, Andreas
Ebner, Lukas
Mougiakakou, Stavroula
contents Masked autoencoders (MAEs) have emerged as a powerful approach for pre-training on unlabelled data, capable of learning robust and informative feature representations. This is particularly advantageous in diffused lung disease research, where annotated imaging datasets are scarce. To leverage this, we train an MAE on a curated collection of over 5,000 chest computed tomography (CT) scans, combining in-house data with publicly available scans from related conditions that exhibit similar radiological patterns, such as COVID-19 and bacterial pneumonia. The pretrained MAE is then fine-tuned on a downstream classification task for diffused lung disease diagnosis. Our findings demonstrate that MAEs can effectively extract clinically meaningful features and improve diagnostic performance, even in the absence of large-scale labelled datasets. The code and the models are available here: https://github.com/eedack01/lung_masked_autoencoder.
format Preprint
id arxiv_https___arxiv_org_abs_2508_04429
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle Unmasking Interstitial Lung Diseases: Leveraging Masked Autoencoders for Diagnosis
Dack, Ethan
Brigato, Lorenzo
Dedousis, Vasilis
Gote-Schniering, Janine
Cheryl
Hoppe, Hanno
Exadaktylos, Aristomenis
Funke-Chambour, Manuela
Geiser, Thomas
Christe, Andreas
Ebner, Lukas
Mougiakakou, Stavroula
Image and Video Processing
Computer Vision and Pattern Recognition
Masked autoencoders (MAEs) have emerged as a powerful approach for pre-training on unlabelled data, capable of learning robust and informative feature representations. This is particularly advantageous in diffused lung disease research, where annotated imaging datasets are scarce. To leverage this, we train an MAE on a curated collection of over 5,000 chest computed tomography (CT) scans, combining in-house data with publicly available scans from related conditions that exhibit similar radiological patterns, such as COVID-19 and bacterial pneumonia. The pretrained MAE is then fine-tuned on a downstream classification task for diffused lung disease diagnosis. Our findings demonstrate that MAEs can effectively extract clinically meaningful features and improve diagnostic performance, even in the absence of large-scale labelled datasets. The code and the models are available here: https://github.com/eedack01/lung_masked_autoencoder.
title Unmasking Interstitial Lung Diseases: Leveraging Masked Autoencoders for Diagnosis
topic Image and Video Processing
Computer Vision and Pattern Recognition
url https://arxiv.org/abs/2508.04429