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| Main Authors: | , , , , , , , |
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| Format: | Preprint |
| Published: |
2025
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| Subjects: | |
| Online Access: | https://arxiv.org/abs/2508.05550 |
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| _version_ | 1866911096182407168 |
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| author | Noel, Vincent Ruscone, Marco Heiland, Randy Montagud, Arnau Valencia, Alfonso Barillot, Emmanuel Macklin, Paul Calzone, Laurence |
| author_facet | Noel, Vincent Ruscone, Marco Heiland, Randy Montagud, Arnau Valencia, Alfonso Barillot, Emmanuel Macklin, Paul Calzone, Laurence |
| contents | PhysiBoSS is an open-source platform that integrates agent-based modeling of cell populations with intracellular stochastic Boolean networks, enabling multiscale simulations of complex biological behaviors. To promote model sharing and versioning, we present the PhysiBoSS-Models database: a curated repository for multiscale models built with PhysiBoSS. By providing a simple Python API, PhysiBoSS-Models provides an easy way to download and simulate preexisting models through tools such as PhysiCell Studio. By providing standardized access to validated models, PhysiBoSS-Models facilitates reuse, validation, and benchmarking, supporting research in biology. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2508_05550 |
| institution | arXiv |
| publishDate | 2025 |
| record_format | arxiv |
| spellingShingle | PhysiBoSS-Models: A database for multiscale models Noel, Vincent Ruscone, Marco Heiland, Randy Montagud, Arnau Valencia, Alfonso Barillot, Emmanuel Macklin, Paul Calzone, Laurence Quantitative Methods PhysiBoSS is an open-source platform that integrates agent-based modeling of cell populations with intracellular stochastic Boolean networks, enabling multiscale simulations of complex biological behaviors. To promote model sharing and versioning, we present the PhysiBoSS-Models database: a curated repository for multiscale models built with PhysiBoSS. By providing a simple Python API, PhysiBoSS-Models provides an easy way to download and simulate preexisting models through tools such as PhysiCell Studio. By providing standardized access to validated models, PhysiBoSS-Models facilitates reuse, validation, and benchmarking, supporting research in biology. |
| title | PhysiBoSS-Models: A database for multiscale models |
| topic | Quantitative Methods |
| url | https://arxiv.org/abs/2508.05550 |