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Autori principali: Merk, Timon, Salehi, Saeed, Koehler, Richard M., Cui, Qiming, Olaru, Maria, Hahn, Amelia, Provenza, Nicole R., Little, Simon, Abbasi-Asl, Reza, Starr, Phil A., Neumann, Wolf-Julian
Natura: Preprint
Pubblicazione: 2025
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Accesso online:https://arxiv.org/abs/2508.10160
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author Merk, Timon
Salehi, Saeed
Koehler, Richard M.
Cui, Qiming
Olaru, Maria
Hahn, Amelia
Provenza, Nicole R.
Little, Simon
Abbasi-Asl, Reza
Starr, Phil A.
Neumann, Wolf-Julian
author_facet Merk, Timon
Salehi, Saeed
Koehler, Richard M.
Cui, Qiming
Olaru, Maria
Hahn, Amelia
Provenza, Nicole R.
Little, Simon
Abbasi-Asl, Reza
Starr, Phil A.
Neumann, Wolf-Julian
contents Neural decoding of pathological and physiological states can enable patient-individualized closed-loop neuromodulation therapy. Recent advances in pre-trained large-scale foundation models offer the potential for generalized state estimation without patient-individual training. Here we present a foundation model trained on chronic longitudinal deep brain stimulation recordings spanning over 24 days. Adhering to long time-scale symptom fluctuations, we highlight the extended context window of 30 minutes. We present an optimized pre-training loss function for neural electrophysiological data that corrects for the frequency bias of common masked auto-encoder loss functions due to the 1-over-f power law. We show in a downstream task the decoding of Parkinson's disease symptoms with leave-one-subject-out cross-validation without patient-individual training.
format Preprint
id arxiv_https___arxiv_org_abs_2508_10160
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle Pre-trained Transformer-models using chronic invasive electrophysiology for symptom decoding without patient-individual training
Merk, Timon
Salehi, Saeed
Koehler, Richard M.
Cui, Qiming
Olaru, Maria
Hahn, Amelia
Provenza, Nicole R.
Little, Simon
Abbasi-Asl, Reza
Starr, Phil A.
Neumann, Wolf-Julian
Human-Computer Interaction
Machine Learning
Neural decoding of pathological and physiological states can enable patient-individualized closed-loop neuromodulation therapy. Recent advances in pre-trained large-scale foundation models offer the potential for generalized state estimation without patient-individual training. Here we present a foundation model trained on chronic longitudinal deep brain stimulation recordings spanning over 24 days. Adhering to long time-scale symptom fluctuations, we highlight the extended context window of 30 minutes. We present an optimized pre-training loss function for neural electrophysiological data that corrects for the frequency bias of common masked auto-encoder loss functions due to the 1-over-f power law. We show in a downstream task the decoding of Parkinson's disease symptoms with leave-one-subject-out cross-validation without patient-individual training.
title Pre-trained Transformer-models using chronic invasive electrophysiology for symptom decoding without patient-individual training
topic Human-Computer Interaction
Machine Learning
url https://arxiv.org/abs/2508.10160