ProtTeX-CC: Activating In-Context Learning in Protein LLM via Two-Stage Instruction Compression
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arXiv
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| Main Authors: | Fan, Chuanliu, Ma, Zicheng, Gao, Jun, Yu, Nan, Zhang, Jun, Cao, Ziqiang, Gao, Yi Qin, Fu, Guohong |
|---|---|
| Format: | Preprint |
| Published: |
2025
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| Subjects: | |
| Online Access: | |
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