Predicting the Performance of Graph Convolutional Networks with Spectral Properties of the Graph Laplacian

Fuente: arXiv
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Main Authors: Manir, Shalima Binta, Oates, Tim
Format: Preprint
Published: 2025
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author Manir, Shalima Binta
Oates, Tim
author_facet Manir, Shalima Binta
Oates, Tim
contents A common observation in the Graph Convolutional Network (GCN) literature is that stacking GCN layers may or may not result in better performance on tasks like node classification and edge prediction. We have found empirically that a graph's algebraic connectivity, which is known as the Fiedler value, is a good predictor of GCN performance. Intuitively, graphs with similar Fiedler values have analogous structural properties, suggesting that the same filters and hyperparameters may yield similar results when used with GCNs, and that transfer learning may be more effective between graphs with similar algebraic connectivity. We explore this theoretically and empirically with experiments on synthetic and real graph data, including the Cora, CiteSeer and Polblogs datasets. We explore multiple ways of aggregating the Fiedler value for connected components in the graphs to arrive at a value for the entire graph, and show that it can be used to predict GCN performance. We also present theoretical arguments as to why the Fiedler value is a good predictor.
format Preprint
id arxiv_https___arxiv_org_abs_2508_12993
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle Predicting the Performance of Graph Convolutional Networks with Spectral Properties of the Graph Laplacian
Manir, Shalima Binta
Oates, Tim
Machine Learning
A common observation in the Graph Convolutional Network (GCN) literature is that stacking GCN layers may or may not result in better performance on tasks like node classification and edge prediction. We have found empirically that a graph's algebraic connectivity, which is known as the Fiedler value, is a good predictor of GCN performance. Intuitively, graphs with similar Fiedler values have analogous structural properties, suggesting that the same filters and hyperparameters may yield similar results when used with GCNs, and that transfer learning may be more effective between graphs with similar algebraic connectivity. We explore this theoretically and empirically with experiments on synthetic and real graph data, including the Cora, CiteSeer and Polblogs datasets. We explore multiple ways of aggregating the Fiedler value for connected components in the graphs to arrive at a value for the entire graph, and show that it can be used to predict GCN performance. We also present theoretical arguments as to why the Fiedler value is a good predictor.
title Predicting the Performance of Graph Convolutional Networks with Spectral Properties of the Graph Laplacian
topic Machine Learning
url https://arxiv.org/abs/2508.12993