Investigating DNA words and their distributions across the tree of life
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arXiv
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| Main Authors: | Koilakos, Charalampos, Provatas, Kimonas, Patsakis, Michail, Karatzikos, Aris, Georgakopoulos-Soares, Ilias |
|---|---|
| Format: | Preprint |
| Published: |
2025
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| Subjects: | |
| Online Access: | |
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