Tensor Network based Gene Regulatory Network Inference for Single-Cell Transcriptomic Data
Fuente:
arXiv
Saved in:
| Main Authors: | Larrarte, Olatz Sanz, Aizpurua, Borja, Dastbasteh, Reza, Otxoa, Ruben M., Martinez, Josu Etxezarreta |
|---|---|
| Format: | Preprint |
| Published: |
2025
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Impact of leakage on the dynamics of a ST$_0$ qubit implemented in a Double Quantum Dot device
by: del Moral, Javier Oliva, et al.
Published: (2024)
by: del Moral, Javier Oliva, et al.
Published: (2024)
Comment on "Recovering noise-free quantum observables"
by: Martinez, Josu Etxezarreta, et al.
Published: (2024)
by: Martinez, Josu Etxezarreta, et al.
Published: (2024)
Generalized Bicycle Codes with Low Connectivity: Minimum Distance Bounds and Hook Errors
by: Dastbasteh, Reza, et al.
Published: (2025)
by: Dastbasteh, Reza, et al.
Published: (2025)
Asymptotically good CSS-T codes and a new construction of triorthogonal codes
by: Berardini, Elena, et al.
Published: (2024)
by: Berardini, Elena, et al.
Published: (2024)
Hacking Cryptographic Protocols with Tensor Network Attacks
by: Aizpurua, Borja, et al.
Published: (2024)
by: Aizpurua, Borja, et al.
Published: (2024)
TRENDY: Gene Regulatory Network Inference Enhanced by Transformer
by: Tian, Xueying, et al.
Published: (2024)
by: Tian, Xueying, et al.
Published: (2024)
WENDY: Covariance Dynamics Based Gene Regulatory Network Inference
by: Wang, Yue, et al.
Published: (2024)
by: Wang, Yue, et al.
Published: (2024)
QWENDY: Gene Regulatory Network Inference by Quadruple Covariance Matrices
by: Wang, Yue, et al.
Published: (2025)
by: Wang, Yue, et al.
Published: (2025)
Machine Learning Methods for Gene Regulatory Network Inference
by: Hegde, Akshata, et al.
Published: (2025)
by: Hegde, Akshata, et al.
Published: (2025)
Modeling Dynamics, Cell Type Specificity, and Perturbations in Gene Regulatory Networks
by: Shin, Junha, et al.
Published: (2026)
by: Shin, Junha, et al.
Published: (2026)
A Novel Quantum Algorithm for Efficient Attractor Search in Gene Regulatory Networks
by: Rossini, Mirko, et al.
Published: (2024)
by: Rossini, Mirko, et al.
Published: (2024)
KINDLE: Knowledge-Guided Distillation for Prior-Free Gene Regulatory Network Inference
by: Peng, Rui, et al.
Published: (2025)
by: Peng, Rui, et al.
Published: (2025)
Leveraging biased noise for more efficient quantum error correction at the circuit-level with two-level qubits
by: Martinez, Josu Etxezarreta, et al.
Published: (2025)
by: Martinez, Josu Etxezarreta, et al.
Published: (2025)
On Networks and their Applications: Stability of Gene Regulatory Networks and Gene Function Prediction using Autoencoders
by: Coban, Hamza
Published: (2024)
by: Coban, Hamza
Published: (2024)
On Hybrid Gene Regulatory Networks
by: Wurm, Adrian, et al.
Published: (2024)
by: Wurm, Adrian, et al.
Published: (2024)
Gene Regulatory Network Inference in the Presence of Dropouts: a Causal View
by: Dai, Haoyue, et al.
Published: (2024)
by: Dai, Haoyue, et al.
Published: (2024)
Counting Subnetworks Under Gene Duplication in Genetic Regulatory Networks
by: Scruse, Ashley, et al.
Published: (2024)
by: Scruse, Ashley, et al.
Published: (2024)
Noise mitigation of quantum observables via learning from Hamiltonian symmetry decays
by: del Moral, Javier Oliva, et al.
Published: (2026)
by: del Moral, Javier Oliva, et al.
Published: (2026)
A Novel Graph Transformer Framework for Gene Regulatory Network Inference
by: Teji, Binon, et al.
Published: (2025)
by: Teji, Binon, et al.
Published: (2025)
GRiNS: A Python Library for Simulating Gene Regulatory Network Dynamics
by: Harlapur, Pradyumna, et al.
Published: (2025)
by: Harlapur, Pradyumna, et al.
Published: (2025)
Hacking Cryptographic Protocols with Advanced Variational Quantum Attacks
by: Aizpurua, Borja, et al.
Published: (2023)
by: Aizpurua, Borja, et al.
Published: (2023)
Biological Regulatory Network Inference through Circular Causal Structure Learning
by: Jiang, Hongyang, et al.
Published: (2025)
by: Jiang, Hongyang, et al.
Published: (2025)
Predictive-Switching Control of Stochastic Gene Regulatory Networks: A Contractive PIDE Framework
by: Fernández, Christian, et al.
Published: (2026)
by: Fernández, Christian, et al.
Published: (2026)
Quantifying Ranking Instability Across Evaluation Protocol Axes in Gene Regulatory Network Benchmarking
by: Kendiukhov, Ihor
Published: (2026)
by: Kendiukhov, Ihor
Published: (2026)
Markovian Promoter Models: A Mechanistic Alternative to Hill Functions in Gene Regulatory Networks
by: Wu, Tianyu
Published: (2025)
by: Wu, Tianyu
Published: (2025)
Corrected Hill Function in Stochastic Gene Regulatory Networks
by: Hernández-García, Manuel Eduardo, et al.
Published: (2023)
by: Hernández-García, Manuel Eduardo, et al.
Published: (2023)
Surface-Code Thresholds and Qubit Footprints in Shuttling-Based Spin-Qubit Railways
by: Moncy, Arun John, et al.
Published: (2026)
by: Moncy, Arun John, et al.
Published: (2026)
Identifying the Attractors of Gene Regulatory Networks from Expression Data under Uncertainty: An Interpretable Approach
by: Rowhanimanesh, Alireza
Published: (2024)
by: Rowhanimanesh, Alireza
Published: (2024)
Logistic Gene Regulatory Networks: Prevention of Expression Shutdown, and Numerical Stability Beyond Hill Function
by: Belgacem, Ismail
Published: (2026)
by: Belgacem, Ismail
Published: (2026)
Alz-QNet: A Quantum Regression Network for Studying Alzheimer's Gene Interactions
by: Konar, Debanjan, et al.
Published: (2025)
by: Konar, Debanjan, et al.
Published: (2025)
Oscillation Criteria in Large-Scale Gene Regulatory Networks with Intrinsic Fluctuations
by: Hernández-García, Manuel Eduardo, et al.
Published: (2026)
by: Hernández-García, Manuel Eduardo, et al.
Published: (2026)
Time-Varying Network Driver Estimation (TNDE) Quantifies Stage-Specific Regulatory Effects From Single-Cell Snapshots
by: Li, Jiaxin, et al.
Published: (2025)
by: Li, Jiaxin, et al.
Published: (2025)
New GO-based Measures and Their Statistical Significance in Multiple Network Alignment
by: Mousapour, Reza, et al.
Published: (2023)
by: Mousapour, Reza, et al.
Published: (2023)
DRAGON: Determining Regulatory Associations using Graphical models on multi-Omic Networks
by: Shutta, Katherine H., et al.
Published: (2021)
by: Shutta, Katherine H., et al.
Published: (2021)
Lomics: Generation of Pathways and Gene Sets using Large Language Models for Transcriptomic Analysis
by: Wong, Chun-Ka, et al.
Published: (2024)
by: Wong, Chun-Ka, et al.
Published: (2024)
Identifying Protein Co-regulatory Network Logic by Solving B-SAT Problems through Gate-based Quantum Computing
by: Brisebois, Aspen Erlandsson, et al.
Published: (2025)
by: Brisebois, Aspen Erlandsson, et al.
Published: (2025)
Evolving Diploid Boolean and Multi-Valued Gene Networks
by: Bull, Larry
Published: (2023)
by: Bull, Larry
Published: (2023)
Biological Multi-Layer and Single Cell Network-Based Multiomics Models - a Review
by: Barylli, Marcello, et al.
Published: (2025)
by: Barylli, Marcello, et al.
Published: (2025)
Optimal Inference of Asynchronous Boolean Network Models
by: Karlebach, Guy
Published: (2025)
by: Karlebach, Guy
Published: (2025)
Accelerating Machine Learning Systems via Category Theory: Applications to Spherical Attention for Gene Regulatory Networks
by: Abbott, Vincent, et al.
Published: (2025)
by: Abbott, Vincent, et al.
Published: (2025)
Similar Items
-
Impact of leakage on the dynamics of a ST$_0$ qubit implemented in a Double Quantum Dot device
by: del Moral, Javier Oliva, et al.
Published: (2024) -
Comment on "Recovering noise-free quantum observables"
by: Martinez, Josu Etxezarreta, et al.
Published: (2024) -
Generalized Bicycle Codes with Low Connectivity: Minimum Distance Bounds and Hook Errors
by: Dastbasteh, Reza, et al.
Published: (2025) -
Asymptotically good CSS-T codes and a new construction of triorthogonal codes
by: Berardini, Elena, et al.
Published: (2024) -
Hacking Cryptographic Protocols with Tensor Network Attacks
by: Aizpurua, Borja, et al.
Published: (2024)