Mathematical Discovery of Potential Therapeutic Targets: Application to Rare Melanomas

Fuente: arXiv
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Autori principali: Aghaee, Mahya, Cicchirillo, Victoria, Milner, Rowan, Adams, Kyle, Bruner, Julia, Hager, William, Brown, Ashley N., Sayour, Elias, Santoro, Domenico, Doonan, Bently, Moore, Helen
Natura: Preprint
Pubblicazione: 2025
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author Aghaee, Mahya
Cicchirillo, Victoria
Milner, Rowan
Adams, Kyle
Bruner, Julia
Hager, William
Brown, Ashley N.
Sayour, Elias
Santoro, Domenico
Doonan, Bently
Moore, Helen
author_facet Aghaee, Mahya
Cicchirillo, Victoria
Milner, Rowan
Adams, Kyle
Bruner, Julia
Hager, William
Brown, Ashley N.
Sayour, Elias
Santoro, Domenico
Doonan, Bently
Moore, Helen
contents Patients with rare types of melanoma such as acral, mucosal, or uveal melanoma, have lower survival rates than patients with cutaneous melanoma; these lower survival rates reflect the lower objective response rates to immunotherapy compared to cutaneous melanoma. Understanding tumor-immune dynamics in rare melanomas is critical for the development of new therapies and for improving response rates to current cancer therapies. Progress has been hindered by the lack of clinical data and the need for better preclinical models of rare melanomas. Canine melanoma provides a valuable comparative oncology model for rare types of human melanomas. We analyzed RNA sequencing data from canine melanoma patients and combined this with literature information to create a novel mechanistic mathematical model of melanoma-immune dynamics. Sensitivity analysis of the mathematical model indicated influential pathways in the dynamics, providing support for potential new therapeutic targets and future combinations of therapies. We share our learnings from this work, to help enable the application of this proof-of-concept workflow to other rare disease settings with sparse available data.
format Preprint
id arxiv_https___arxiv_org_abs_2509_08013
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle Mathematical Discovery of Potential Therapeutic Targets: Application to Rare Melanomas
Aghaee, Mahya
Cicchirillo, Victoria
Milner, Rowan
Adams, Kyle
Bruner, Julia
Hager, William
Brown, Ashley N.
Sayour, Elias
Santoro, Domenico
Doonan, Bently
Moore, Helen
Quantitative Methods
Patients with rare types of melanoma such as acral, mucosal, or uveal melanoma, have lower survival rates than patients with cutaneous melanoma; these lower survival rates reflect the lower objective response rates to immunotherapy compared to cutaneous melanoma. Understanding tumor-immune dynamics in rare melanomas is critical for the development of new therapies and for improving response rates to current cancer therapies. Progress has been hindered by the lack of clinical data and the need for better preclinical models of rare melanomas. Canine melanoma provides a valuable comparative oncology model for rare types of human melanomas. We analyzed RNA sequencing data from canine melanoma patients and combined this with literature information to create a novel mechanistic mathematical model of melanoma-immune dynamics. Sensitivity analysis of the mathematical model indicated influential pathways in the dynamics, providing support for potential new therapeutic targets and future combinations of therapies. We share our learnings from this work, to help enable the application of this proof-of-concept workflow to other rare disease settings with sparse available data.
title Mathematical Discovery of Potential Therapeutic Targets: Application to Rare Melanomas
topic Quantitative Methods
url https://arxiv.org/abs/2509.08013