HGEN: Heterogeneous Graph Ensemble Networks

Fuente: arXiv
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Autores principales: Shen, Jiajun, Jin, Yufei, He, Yi, Zhu, Xingquan
Formato: Preprint
Publicado: 2025
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author Shen, Jiajun
Jin, Yufei
He, Yi
Zhu, Xingquan
author_facet Shen, Jiajun
Jin, Yufei
He, Yi
Zhu, Xingquan
contents This paper presents HGEN that pioneers ensemble learning for heterogeneous graphs. We argue that the heterogeneity in node types, nodal features, and local neighborhood topology poses significant challenges for ensemble learning, particularly in accommodating diverse graph learners. Our HGEN framework ensembles multiple learners through a meta-path and transformation-based optimization pipeline to uplift classification accuracy. Specifically, HGEN uses meta-path combined with random dropping to create Allele Graph Neural Networks (GNNs), whereby the base graph learners are trained and aligned for later ensembling. To ensure effective ensemble learning, HGEN presents two key components: 1) a residual-attention mechanism to calibrate allele GNNs of different meta-paths, thereby enforcing node embeddings to focus on more informative graphs to improve base learner accuracy, and 2) a correlation-regularization term to enlarge the disparity among embedding matrices generated from different meta-paths, thereby enriching base learner diversity. We analyze the convergence of HGEN and attest its higher regularization magnitude over simple voting. Experiments on five heterogeneous networks validate that HGEN consistently outperforms its state-of-the-art competitors by substantial margin.
format Preprint
id arxiv_https___arxiv_org_abs_2509_09843
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle HGEN: Heterogeneous Graph Ensemble Networks
Shen, Jiajun
Jin, Yufei
He, Yi
Zhu, Xingquan
Machine Learning
Artificial Intelligence
This paper presents HGEN that pioneers ensemble learning for heterogeneous graphs. We argue that the heterogeneity in node types, nodal features, and local neighborhood topology poses significant challenges for ensemble learning, particularly in accommodating diverse graph learners. Our HGEN framework ensembles multiple learners through a meta-path and transformation-based optimization pipeline to uplift classification accuracy. Specifically, HGEN uses meta-path combined with random dropping to create Allele Graph Neural Networks (GNNs), whereby the base graph learners are trained and aligned for later ensembling. To ensure effective ensemble learning, HGEN presents two key components: 1) a residual-attention mechanism to calibrate allele GNNs of different meta-paths, thereby enforcing node embeddings to focus on more informative graphs to improve base learner accuracy, and 2) a correlation-regularization term to enlarge the disparity among embedding matrices generated from different meta-paths, thereby enriching base learner diversity. We analyze the convergence of HGEN and attest its higher regularization magnitude over simple voting. Experiments on five heterogeneous networks validate that HGEN consistently outperforms its state-of-the-art competitors by substantial margin.
title HGEN: Heterogeneous Graph Ensemble Networks
topic Machine Learning
Artificial Intelligence
url https://arxiv.org/abs/2509.09843