All that structure matches does not glitter
Fuente:
arXiv
Saved in:
| Main Authors: | , , , , , , , , , |
|---|---|
| Format: | Preprint |
| Published: |
2025
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
| _version_ | 1866909940911702016 |
|---|---|
| author | Martirossyan, Maya M. Egg, Thomas Hoellmer, Philipp Karypis, George Transtrum, Mark Roitberg, Adrian Liu, Mingjie Hennig, Richard G. Tadmor, Ellad B. Martiniani, Stefano |
| author_facet | Martirossyan, Maya M. Egg, Thomas Hoellmer, Philipp Karypis, George Transtrum, Mark Roitberg, Adrian Liu, Mingjie Hennig, Richard G. Tadmor, Ellad B. Martiniani, Stefano |
| contents | Generative models for materials, especially inorganic crystals, hold potential to transform the theoretical prediction of novel compounds and structures. Advancement in this field depends on robust benchmarks and minimal, information-rich datasets that enable meaningful model evaluation. This paper critically examines common datasets and reported metrics for a crystal structure prediction task$\unicode{x2014}$generating the most likely structures given the chemical composition of a material. We focus on three key issues: First, materials datasets should contain unique crystal structures; for example, we show that the widely-utilized carbon-24 dataset only contains $\approx$40% unique structures. Second, materials datasets should not be split randomly if polymorphs of many different compositions are numerous, which we find to be the case for the perov-5 and MP-20 datasets. Third, benchmarks can mislead if used uncritically, e.g., reporting a match rate metric without considering the structural variety exhibited by identical building blocks. To address these oft-overlooked issues, we introduce several fixes. We provide revised versions of the carbon-24 dataset: one with duplicates removed, one deduplicated and split by number of atoms $N$, one with enantiomorphs, and two containing only identical structures but with different unit cells. We also propose new splits for datasets with polymorphs, ensuring that polymorphs are grouped within each split subset, setting a more sensible standard for benchmarking model performance. Finally, we present METRe and cRMSE, new model evaluation metrics that can correct existing issues with the match rate metric. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2509_12178 |
| institution | arXiv |
| publishDate | 2025 |
| record_format | arxiv |
| spellingShingle | All that structure matches does not glitter Martirossyan, Maya M. Egg, Thomas Hoellmer, Philipp Karypis, George Transtrum, Mark Roitberg, Adrian Liu, Mingjie Hennig, Richard G. Tadmor, Ellad B. Martiniani, Stefano Machine Learning Materials Science Generative models for materials, especially inorganic crystals, hold potential to transform the theoretical prediction of novel compounds and structures. Advancement in this field depends on robust benchmarks and minimal, information-rich datasets that enable meaningful model evaluation. This paper critically examines common datasets and reported metrics for a crystal structure prediction task$\unicode{x2014}$generating the most likely structures given the chemical composition of a material. We focus on three key issues: First, materials datasets should contain unique crystal structures; for example, we show that the widely-utilized carbon-24 dataset only contains $\approx$40% unique structures. Second, materials datasets should not be split randomly if polymorphs of many different compositions are numerous, which we find to be the case for the perov-5 and MP-20 datasets. Third, benchmarks can mislead if used uncritically, e.g., reporting a match rate metric without considering the structural variety exhibited by identical building blocks. To address these oft-overlooked issues, we introduce several fixes. We provide revised versions of the carbon-24 dataset: one with duplicates removed, one deduplicated and split by number of atoms $N$, one with enantiomorphs, and two containing only identical structures but with different unit cells. We also propose new splits for datasets with polymorphs, ensuring that polymorphs are grouped within each split subset, setting a more sensible standard for benchmarking model performance. Finally, we present METRe and cRMSE, new model evaluation metrics that can correct existing issues with the match rate metric. |
| title | All that structure matches does not glitter |
| topic | Machine Learning Materials Science |
| url | https://arxiv.org/abs/2509.12178 |