Uchimata: a toolkit for visualization of 3D genome structures on the web and in computational notebooks
Fuente:
arXiv
Saved in:
| Main Authors: | Kouřil, David, Manz, Trevor, Clarence, Tereza, Gehlenborg, Nils |
|---|---|
| Format: | Preprint |
| Published: |
2025
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Gosling Designer: a Platform to Democratize Construction and Sharing of Genomics Data Visualization Tools
by: L'Yi, Sehi, et al.
Published: (2025)
by: L'Yi, Sehi, et al.
Published: (2025)
wgatools: an ultrafast toolkit for manipulating whole genome alignments
by: Wei, Wenjie, et al.
Published: (2024)
by: Wei, Wenjie, et al.
Published: (2024)
ProSt: computing, storing and visualizing attributes of prokaryotic genomes
by: Gonnella, Giorgio
Published: (2023)
by: Gonnella, Giorgio
Published: (2023)
gggenomes: effective and versatile visualizations for comparative genomics
by: Hackl, Thomas, et al.
Published: (2024)
by: Hackl, Thomas, et al.
Published: (2024)
GQVis: A Dataset of Genomics Data Questions and Visualizations for Generative AI
by: Walters, Skylar Sargent, et al.
Published: (2025)
by: Walters, Skylar Sargent, et al.
Published: (2025)
BioKlustering: a web app for semi-supervised learning of maximally imbalanced genomic data
by: Ozminkowski, Samuel, et al.
Published: (2022)
by: Ozminkowski, Samuel, et al.
Published: (2022)
Reference genome for the benthic marine diatom Psammoneis japonica: Bacterial associations and repeat-driven genome size evolution in diatoms.
by: Roberts, Wade R, et al.
Published: (2025)
by: Roberts, Wade R, et al.
Published: (2025)
Expanding the toolkit for ploidy manipulation in Chlamydomonas reinhardtii.
by: Van de Vloet, Antoine, et al.
Published: (2025)
by: Van de Vloet, Antoine, et al.
Published: (2025)
Population and herbarium genomics provide a comprehensive framework for a revision of Microcoleus (Cyanobacteria).
by: Skoupý, Svatopluk, et al.
Published: (2026)
by: Skoupý, Svatopluk, et al.
Published: (2026)
AMRScan: A hybrid R and Nextflow toolkit for rapid antimicrobial resistance gene detection from sequencing data
by: Lai, Kaitao
Published: (2025)
by: Lai, Kaitao
Published: (2025)
Zimin patterns in genomes
by: Chantzi, Nikol, et al.
Published: (2024)
by: Chantzi, Nikol, et al.
Published: (2024)
Pangenome insights into structural variation and functional diversification of barley CCT motif genes
by: Zihao Zhu, et al.
Published: (2025)
by: Zihao Zhu, et al.
Published: (2025)
Machine and deep learning methods for predicting 3D genome organization
by: Wall, Brydon P. G., et al.
Published: (2024)
by: Wall, Brydon P. G., et al.
Published: (2024)
The genome of a low‐seeded mandarin, Premier, displays major structural changes due to gamma irradiation
by: Upuli Nakandala, et al.
Published: (2026)
by: Upuli Nakandala, et al.
Published: (2026)
Agptools: a utility suite for editing genome assemblies
by: Ricemeyer, Edward S., et al.
Published: (2025)
by: Ricemeyer, Edward S., et al.
Published: (2025)
Complete genome sequence of Lysinibacillus sp. WB86, a potential antimicrobial lanthipeptides producer.
by: Sun, Huai-Ying, et al.
Published: (2025)
by: Sun, Huai-Ying, et al.
Published: (2025)
Two genomes of the white perch (Morone americana), an ecologically important teleost.
by: Paris, Josephine R, et al.
Published: (2025)
by: Paris, Josephine R, et al.
Published: (2025)
Annotated genome of the Atlantic dog whelk, Nucella lapillus.
by: Ford, Meghan R, et al.
Published: (2025)
by: Ford, Meghan R, et al.
Published: (2025)
Complete genome sequence of the marine mangrove fungus Sarcopodium sp.QM3-1 confirmed its high potential for antimicrobial activity.
by: Zhang, Wenzhou, et al.
Published: (2025)
by: Zhang, Wenzhou, et al.
Published: (2025)
MedakaBase as a unified genomic resource platform for medaka fish biology.
by: Morikami, Kenji, et al.
Published: (2025)
by: Morikami, Kenji, et al.
Published: (2025)
Identification of a deep-branching lineage of algae using environmental plastid genomes.
by: Jamy, Mahwash, et al.
Published: (2025)
by: Jamy, Mahwash, et al.
Published: (2025)
VEPerform: a web resource for evaluating the performance of variant effect predictors
by: Zhang, Cindy, et al.
Published: (2024)
by: Zhang, Cindy, et al.
Published: (2024)
Perspective on recent developments and challenges in regulatory and systems genomics
by: Zeiltinger, Julia, et al.
Published: (2024)
by: Zeiltinger, Julia, et al.
Published: (2024)
Understanding genome structure facilitates the use of wild lentil germplasm for breeding: A case study with shattering loci
by: Zhe Cao, et al.
Published: (2024)
by: Zhe Cao, et al.
Published: (2024)
Hybrid kernels integrating genomic and multispectral data improve wheat genomic prediction accuracy
by: Osval A. Montesinos‐López, et al.
Published: (2025)
by: Osval A. Montesinos‐López, et al.
Published: (2025)
The Amphibian Genomics Consortium: advancing genomic and genetic resources for amphibian research and conservation.
by: Kosch, Tiffany A, et al.
Published: (2024)
by: Kosch, Tiffany A, et al.
Published: (2024)
Guide to k-mer approaches for genomics across the tree of life
by: Jenike, Katharine M., et al.
Published: (2024)
by: Jenike, Katharine M., et al.
Published: (2024)
Combining genome‐wide association and genomic prediction to unravel the genetic architecture of carotenoid accumulation in carrot
by: William R. Rolling, et al.
Published: (2025)
by: William R. Rolling, et al.
Published: (2025)
Exploring the role of FAT genes in Solanaceae species through genome‐wide analysis and genome editing
by: Sibel Bahadır, et al.
Published: (2024)
by: Sibel Bahadır, et al.
Published: (2024)
Rethinking eukaryogenesis: genomic signatures suggest an aerobic host.
by: Du, Huan, et al.
Published: (2026)
by: Du, Huan, et al.
Published: (2026)
Polyphasic characterization and genomic insights of the cyanobacteria Aphanothece microscopica and A. stagnina from Southern Brazil with emphasis on fatty acid biosynthesis.
by: Delgado, Ronald Tarazona, et al.
Published: (2025)
by: Delgado, Ronald Tarazona, et al.
Published: (2025)
ChloroScan: Recovering plastid genome bins from metagenomic data
by: Tong, Yuhao, et al.
Published: (2025)
by: Tong, Yuhao, et al.
Published: (2025)
GlobDB: A comprehensive species-dereplicated microbial genome resource
by: Speth, Daan R., et al.
Published: (2025)
by: Speth, Daan R., et al.
Published: (2025)
Integrated chloroplast genomics and whole‐genome resequencing reveals demographic history and selection signatures of black walnuts
by: Hang Ye, et al.
Published: (2025)
by: Hang Ye, et al.
Published: (2025)
Chromosome‐level genome of Zoysia sinica in the intertidal zone reveals genomic insights into waterlogging stress adaptation
by: Hyeonseon Park, et al.
Published: (2025)
by: Hyeonseon Park, et al.
Published: (2025)
Whole-genome duplications revealed by macronuclear genomes of five rare species of the model ciliates Paramecium.
by: Ni, Jiahao, et al.
Published: (2025)
by: Ni, Jiahao, et al.
Published: (2025)
Moonshine.jl: a Julia package for genome-scale model-based ancestral recombination graph inference
by: Fournier, Patrick, et al.
Published: (2025)
by: Fournier, Patrick, et al.
Published: (2025)
Annotation of protein-coding genes in 49 diatom genomes from the Bacillariophyta clade
by: Nenasheva, Natalia, et al.
Published: (2024)
by: Nenasheva, Natalia, et al.
Published: (2024)
Leveraging genomic deep learning models for the prediction of non-coding variant effects
by: Kathail, Pooja, et al.
Published: (2024)
by: Kathail, Pooja, et al.
Published: (2024)
First whole genome sequence of a diploid crop wild relative of the Andean tuber “oca”: Annotation and comparative genomic analysis of Oxalis oulophora
by: Dilrini Vanrooyen, et al.
Published: (2026)
by: Dilrini Vanrooyen, et al.
Published: (2026)
Similar Items
-
Gosling Designer: a Platform to Democratize Construction and Sharing of Genomics Data Visualization Tools
by: L'Yi, Sehi, et al.
Published: (2025) -
wgatools: an ultrafast toolkit for manipulating whole genome alignments
by: Wei, Wenjie, et al.
Published: (2024) -
ProSt: computing, storing and visualizing attributes of prokaryotic genomes
by: Gonnella, Giorgio
Published: (2023) -
gggenomes: effective and versatile visualizations for comparative genomics
by: Hackl, Thomas, et al.
Published: (2024) -
GQVis: A Dataset of Genomics Data Questions and Visualizations for Generative AI
by: Walters, Skylar Sargent, et al.
Published: (2025)