Causality-Induced Positional Encoding for Transformer-Based Representation Learning of Non-Sequential Features
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arXiv
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| Main Authors: | Xu, Kaichen, Du, Yihang, Liu, Mianpeng, Yu, Zimu, Sun, Xiaobo |
|---|---|
| Format: | Preprint |
| Published: |
2025
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| Subjects: | |
| Online Access: | |
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