A tutorial on electrogastrography using low-cost hardware and open-source software
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arXiv
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| Format: | Preprint |
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2025
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| _version_ | 1866908985180815360 |
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| author | Anisimova, Evgeniya Alladin, Sameer N. B. Tsamaz, Styliani Dalmaijer, Edwin S. |
| author_facet | Anisimova, Evgeniya Alladin, Sameer N. B. Tsamaz, Styliani Dalmaijer, Edwin S. |
| contents | Electrogastrography is the recording of changes in electric potential caused by the stomach's pacemaker region, typically through several cutaneous sensors placed on the abdomen. It is a worthwhile technique in medical and psychological research, but also relatively niche. Here we present a tutorial on the acquisition and analysis of the human electrogastrogram. Because dedicated equipment and software can be prohibitively expensive, we demonstrate how data can be acquired using a low-cost OpenBCI Ganglion amplifier. We also present a processing pipeline that minimises attrition, which is particularly helpful for low-cost equipment but also applicable to top-of-the-line hardware. Our approach comprises outlier rejection, frequency filtering, movement filtering, and noise reduction using independent component analysis. Where traditional approaches include a subjective step in which only one channel is manually selected for further analysis, our pipeline recomposes the electrogastrogram from all recorded channels after automatic rejection of nuisance components. The main benefits of this approach are reduced attrition, retention of data from all recorded channels, and reduced influence of researcher bias. In addition to our tutorial on the method, we offer a proof-of-principle in which our approach leads to reduced data rejection compared to established methods. We aimed to describe each step in sufficient detail to be implemented in any programming language. In addition, we made an open-source Python package freely available for ease of use. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2509_17260 |
| institution | arXiv |
| publishDate | 2025 |
| record_format | arxiv |
| spellingShingle | A tutorial on electrogastrography using low-cost hardware and open-source software Anisimova, Evgeniya Alladin, Sameer N. B. Tsamaz, Styliani Dalmaijer, Edwin S. Neurons and Cognition Other Computer Science Applications Electrogastrography is the recording of changes in electric potential caused by the stomach's pacemaker region, typically through several cutaneous sensors placed on the abdomen. It is a worthwhile technique in medical and psychological research, but also relatively niche. Here we present a tutorial on the acquisition and analysis of the human electrogastrogram. Because dedicated equipment and software can be prohibitively expensive, we demonstrate how data can be acquired using a low-cost OpenBCI Ganglion amplifier. We also present a processing pipeline that minimises attrition, which is particularly helpful for low-cost equipment but also applicable to top-of-the-line hardware. Our approach comprises outlier rejection, frequency filtering, movement filtering, and noise reduction using independent component analysis. Where traditional approaches include a subjective step in which only one channel is manually selected for further analysis, our pipeline recomposes the electrogastrogram from all recorded channels after automatic rejection of nuisance components. The main benefits of this approach are reduced attrition, retention of data from all recorded channels, and reduced influence of researcher bias. In addition to our tutorial on the method, we offer a proof-of-principle in which our approach leads to reduced data rejection compared to established methods. We aimed to describe each step in sufficient detail to be implemented in any programming language. In addition, we made an open-source Python package freely available for ease of use. |
| title | A tutorial on electrogastrography using low-cost hardware and open-source software |
| topic | Neurons and Cognition Other Computer Science Applications |
| url | https://arxiv.org/abs/2509.17260 |