Rational Multi-Modal Transformers for TCR-pMHC Prediction
Fuente:
arXiv
Saved in:
| Main Authors: | Li, Jiarui, Yin, Zixiang, Ding, Zhengming, Landry, Samuel J., Mettu, Ramgopal R. |
|---|---|
| Format: | Preprint |
| Published: |
2025
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
TCR-EML: Explainable Model Layers for TCR-pMHC Prediction
by: Li, Jiarui, et al.
Published: (2025)
by: Li, Jiarui, et al.
Published: (2025)
Quantifying Cross-Attention Interaction in Transformers for Interpreting TCR-pMHC Binding
by: Li, Jiarui, et al.
Published: (2025)
by: Li, Jiarui, et al.
Published: (2025)
ImmSET: Sequence-Based Predictor of TCR-pMHC Specificity at Scale
by: Noceda, Marco Garcia, et al.
Published: (2026)
by: Noceda, Marco Garcia, et al.
Published: (2026)
$i$MIND: Insightful Multi-subject Invariant Neural Decoding
by: Yin, Zixiang, et al.
Published: (2025)
by: Yin, Zixiang, et al.
Published: (2025)
HECLIP: Histology-Enhanced Contrastive Learning for Imputation of Transcriptomics Profiles
by: Wang, Qing, et al.
Published: (2025)
by: Wang, Qing, et al.
Published: (2025)
PhoTorch: A robust and generalized biochemical photosynthesis model fitting package based on PyTorch
by: Lei, Tong, et al.
Published: (2025)
by: Lei, Tong, et al.
Published: (2025)
Projecting Molecules into Synthesizable Chemical Spaces
by: Luo, Shitong, et al.
Published: (2024)
by: Luo, Shitong, et al.
Published: (2024)
Omni-fMRI: A Universal Atlas-Free fMRI Foundation Model
by: Wang, Mo, et al.
Published: (2026)
by: Wang, Mo, et al.
Published: (2026)
FOSS solution for Molecular Dynamics Simulation Automation and Collaboration with MDSGAT
by: Nelson, Jai Geddes, et al.
Published: (2025)
by: Nelson, Jai Geddes, et al.
Published: (2025)
Small Language Models Can Use Nuanced Reasoning For Health Science Research Classification: A Microbial-Oncogenesis Case Study
by: Dawood, Muhammed Muaaz, et al.
Published: (2025)
by: Dawood, Muhammed Muaaz, et al.
Published: (2025)
DOT: A flexible multi-objective optimization framework for transferring features across single-cell and spatial omics
by: Rahimi, Arezou, et al.
Published: (2023)
by: Rahimi, Arezou, et al.
Published: (2023)
Automated discovery of interpretable hyperelastic material models for human brain tissue with EUCLID
by: Flaschel, Moritz, et al.
Published: (2023)
by: Flaschel, Moritz, et al.
Published: (2023)
Comparative Analysis of Formula and Structure Prediction from Tandem Mass Spectra
by: Che, Xujun, et al.
Published: (2026)
by: Che, Xujun, et al.
Published: (2026)
Physical formula enhanced multi-task learning for pharmacokinetics prediction
by: Li, Ruifeng, et al.
Published: (2024)
by: Li, Ruifeng, et al.
Published: (2024)
Efficient Training of Transformers for Molecule Property Prediction on Small-scale Datasets
by: Prakash, Shivesh
Published: (2024)
by: Prakash, Shivesh
Published: (2024)
InstructPLM-mu: 1-Hour Fine-Tuning of ESM2 Beats ESM3 in Protein Mutation Predictions
by: Xu, Junde, et al.
Published: (2025)
by: Xu, Junde, et al.
Published: (2025)
Generation of structure-guided pMHC-I libraries using Diffusion Models
by: Mares, Sergio, et al.
Published: (2025)
by: Mares, Sergio, et al.
Published: (2025)
Continued domain-specific pre-training of protein language models for pMHC-I binding prediction
by: Mares, Sergio E., et al.
Published: (2025)
by: Mares, Sergio E., et al.
Published: (2025)
A Robust eLORETA Technique for Localization of Brain Sources in the Presence of Forward Model Uncertainties
by: Noroozi, A., et al.
Published: (2024)
by: Noroozi, A., et al.
Published: (2024)
Rapid Development of Efficient Participant-Specific Computational Models of the Wrist
by: Andreassen, Thor E., et al.
Published: (2025)
by: Andreassen, Thor E., et al.
Published: (2025)
CAPSUL: A Comprehensive Human Protein Benchmark for Subcellular Localization
by: Hu, Yicheng, et al.
Published: (2026)
by: Hu, Yicheng, et al.
Published: (2026)
A Deep Neural Network -- Mechanistic Hybrid Model to Predict Pharmacokinetics in Rat
by: Führer, Florian, et al.
Published: (2023)
by: Führer, Florian, et al.
Published: (2023)
SDFStent: Real-time interactive virtual stenting via SDF deformation fields
by: Li, Bohan J., et al.
Published: (2026)
by: Li, Bohan J., et al.
Published: (2026)
Boltzina: Efficient and Accurate Virtual Screening via Docking-Guided Binding Prediction with Boltz-2
by: Furui, Kairi, et al.
Published: (2025)
by: Furui, Kairi, et al.
Published: (2025)
Large Language Models for Bioinformatics
by: Ruan, Wei, et al.
Published: (2025)
by: Ruan, Wei, et al.
Published: (2025)
The Patient is not a Moving Document: A World Model Training Paradigm for Longitudinal EHR
by: Adam, Irsyad, et al.
Published: (2026)
by: Adam, Irsyad, et al.
Published: (2026)
AbFlow : End-to-end Paratope-Centric Antibody Design by Interaction Enhanced Flow Matching
by: Wang, Wenda, et al.
Published: (2026)
by: Wang, Wenda, et al.
Published: (2026)
ADEPT: A Noninvasive Method for Determining Elastic Parameters of Valve Tissue
by: Wu, Wensi, et al.
Published: (2024)
by: Wu, Wensi, et al.
Published: (2024)
Controllable Protein Sequence Generation with LLM Preference Optimization
by: Liu, Xiangyu, et al.
Published: (2025)
by: Liu, Xiangyu, et al.
Published: (2025)
Approximate Constrained Lumping of Chemical Reaction Networks
by: Leguizamon-Robayo, Alexander, et al.
Published: (2024)
by: Leguizamon-Robayo, Alexander, et al.
Published: (2024)
Physio-DPO: Aligning Large Language Models with the Protein Energy Landscape to Eliminate Structural Hallucinations
by: Meng, QiWei
Published: (2026)
by: Meng, QiWei
Published: (2026)
Geometric Deep Learning for Structure-Based Drug Design: A Survey
by: Zhang, Zaixi, et al.
Published: (2023)
by: Zhang, Zaixi, et al.
Published: (2023)
HarmonyCell: Automating Single-Cell Perturbation Modeling under Semantic and Distribution Shifts
by: Huang, Wenxuan, et al.
Published: (2026)
by: Huang, Wenxuan, et al.
Published: (2026)
Retrosynthesis Prediction via Search in (Hyper) Graph
by: Lan, Zixun, et al.
Published: (2024)
by: Lan, Zixun, et al.
Published: (2024)
ReactZyme: A Benchmark for Enzyme-Reaction Prediction
by: Hua, Chenqing, et al.
Published: (2024)
by: Hua, Chenqing, et al.
Published: (2024)
LANTERN: A Machine Learning Framework for Lipid Nanoparticle Transfection Efficiency Prediction
by: Mehradfar, Asal, et al.
Published: (2025)
by: Mehradfar, Asal, et al.
Published: (2025)
BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task Tuning
by: Pei, Qizhi, et al.
Published: (2024)
by: Pei, Qizhi, et al.
Published: (2024)
MolecularGPT: Open Large Language Model (LLM) for Few-Shot Molecular Property Prediction
by: Liu, Yuyan, et al.
Published: (2024)
by: Liu, Yuyan, et al.
Published: (2024)
Clustering for Protein Representation Learning
by: Quan, Ruijie, et al.
Published: (2024)
by: Quan, Ruijie, et al.
Published: (2024)
Martinize2 and Vermouth: Unified Framework for Topology Generation
by: Kroon, Peter C., et al.
Published: (2022)
by: Kroon, Peter C., et al.
Published: (2022)
Similar Items
-
TCR-EML: Explainable Model Layers for TCR-pMHC Prediction
by: Li, Jiarui, et al.
Published: (2025) -
Quantifying Cross-Attention Interaction in Transformers for Interpreting TCR-pMHC Binding
by: Li, Jiarui, et al.
Published: (2025) -
ImmSET: Sequence-Based Predictor of TCR-pMHC Specificity at Scale
by: Noceda, Marco Garcia, et al.
Published: (2026) -
$i$MIND: Insightful Multi-subject Invariant Neural Decoding
by: Yin, Zixiang, et al.
Published: (2025) -
HECLIP: Histology-Enhanced Contrastive Learning for Imputation of Transcriptomics Profiles
by: Wang, Qing, et al.
Published: (2025)