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| Main Authors: | , , , , , |
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| Format: | Preprint |
| Published: |
2025
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| Subjects: | |
| Online Access: | https://arxiv.org/abs/2509.20728 |
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| _version_ | 1866914055886733312 |
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| author | Yang, Wenjun Wang, Chuang Davis, Tina Uh, Jinsoo Hua, Chia-Ho Merchant, Thomas E. |
| author_facet | Yang, Wenjun Wang, Chuang Davis, Tina Uh, Jinsoo Hua, Chia-Ho Merchant, Thomas E. |
| contents | Purpose: Convolutional neural networks (CNNs) are promising in predicting treatment outcome for pediatric craniopharyngioma while the decision mechanisms are difficult to interpret. We compared the activation maps of CNN with hand crafted radiomics features of a densely connected artificial neural network (ANN) to correlate with clinical decisions. Methods: A cohort of 100 pediatric craniopharyngioma patients were included. Binary tumor progression was classified by an ANN and CNN with input of T1w, T2w, and FLAIR MRI. Hand-crafted radiomic features were calculated from the MRI using the LifeX software and key features were selected by Group lasso regularization, comparing to the activation maps of CNN. We evaluated the radiomics models by accuracy, area under receiver operational curve (AUC), and confusion matrices. Results: The average accuracy of T1w, T2w, and FLAIR MRI was 0.85, 0.92, and 0.86 (ANOVA, F = 1.96, P = 0.18) with ANN; 0.83, 0.81, and 0.70 (ANOVA, F = 10.11, P = 0.003) with CNN. The average AUC of ANN was 0.91, 0.97, and 0.90; 0.86, 0.88, and 0.75 of CNN for the 3 MRI, respectively. The activation maps were correlated with tumor shape, min and max intensity, and texture features. Conclusions: The tumor progression for pediatric patients with craniopharyngioma achieved promising accuracy with ANN and CNN model. The activation maps extracted from different levels were interpreted with hand-crafted key features of ANN. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2509_20728 |
| institution | arXiv |
| publishDate | 2025 |
| record_format | arxiv |
| spellingShingle | Interpreting Convolutional Neural Network Activation Maps with Hand-crafted Radiomics Features on Progression of Pediatric Craniopharyngioma after Irradiation Therapy Yang, Wenjun Wang, Chuang Davis, Tina Uh, Jinsoo Hua, Chia-Ho Merchant, Thomas E. Medical Physics Purpose: Convolutional neural networks (CNNs) are promising in predicting treatment outcome for pediatric craniopharyngioma while the decision mechanisms are difficult to interpret. We compared the activation maps of CNN with hand crafted radiomics features of a densely connected artificial neural network (ANN) to correlate with clinical decisions. Methods: A cohort of 100 pediatric craniopharyngioma patients were included. Binary tumor progression was classified by an ANN and CNN with input of T1w, T2w, and FLAIR MRI. Hand-crafted radiomic features were calculated from the MRI using the LifeX software and key features were selected by Group lasso regularization, comparing to the activation maps of CNN. We evaluated the radiomics models by accuracy, area under receiver operational curve (AUC), and confusion matrices. Results: The average accuracy of T1w, T2w, and FLAIR MRI was 0.85, 0.92, and 0.86 (ANOVA, F = 1.96, P = 0.18) with ANN; 0.83, 0.81, and 0.70 (ANOVA, F = 10.11, P = 0.003) with CNN. The average AUC of ANN was 0.91, 0.97, and 0.90; 0.86, 0.88, and 0.75 of CNN for the 3 MRI, respectively. The activation maps were correlated with tumor shape, min and max intensity, and texture features. Conclusions: The tumor progression for pediatric patients with craniopharyngioma achieved promising accuracy with ANN and CNN model. The activation maps extracted from different levels were interpreted with hand-crafted key features of ANN. |
| title | Interpreting Convolutional Neural Network Activation Maps with Hand-crafted Radiomics Features on Progression of Pediatric Craniopharyngioma after Irradiation Therapy |
| topic | Medical Physics |
| url | https://arxiv.org/abs/2509.20728 |