ABConformer: Physics-inspired Sliding Attention for Antibody-Antigen Interface Prediction
Fuente:
arXiv
Saved in:
| Main Authors: | You, Zhang-Yu, Ma, Jiahao, Li, Hongzong, Hu, Ye-Fan, Huang, Jian-Dong |
|---|---|
| Format: | Preprint |
| Published: |
2025
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
CAME-AB: Cross-Modality Attention with Mixture-of-Experts for Antibody Binding Site Prediction
by: Li, Hongzong, et al.
Published: (2025)
by: Li, Hongzong, et al.
Published: (2025)
BConformeR: A Conformer Based on Mutual Sampling for Unified Prediction of Continuous and Discontinuous Antibody Binding Sites
by: You, Zhangyu, et al.
Published: (2025)
by: You, Zhangyu, et al.
Published: (2025)
TopoBind: Multi-Modal Prediction of Antibody-Antigen Binding Free Energy via Sequence Embeddings and Structural Topology
by: Yu, Ciyuan, et al.
Published: (2025)
by: Yu, Ciyuan, et al.
Published: (2025)
Remodeling Peptide-MHC-TCR Triad Binding as Sequence Fusion for Immunogenicity Prediction
by: Ma, Jiahao, et al.
Published: (2025)
by: Ma, Jiahao, et al.
Published: (2025)
Physicochemically Informed Dual-Conditioned Generative Model of T-Cell Receptor Variable Regions for Cellular Therapy
by: Ma, Jiahao, et al.
Published: (2025)
by: Ma, Jiahao, et al.
Published: (2025)
Antigen-Specific Antibody Design via Direct Energy-based Preference Optimization
by: Zhou, Xiangxin, et al.
Published: (2024)
by: Zhou, Xiangxin, et al.
Published: (2024)
AbRank: A Benchmark Dataset and Metric-Learning Framework for Antibody-Antigen Affinity Ranking
by: Liu, Chunan, et al.
Published: (2025)
by: Liu, Chunan, et al.
Published: (2025)
Precise Antigen-Antibody Structure Predictions Enhance Antibody Development with HelixFold-Multimer
by: Gao, Jie, et al.
Published: (2024)
by: Gao, Jie, et al.
Published: (2024)
Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins
by: Dreyer, Frédéric A., et al.
Published: (2025)
by: Dreyer, Frédéric A., et al.
Published: (2025)
Rigid Protein-Protein Docking via Equivariant Elliptic-Paraboloid Interface Prediction
by: Yu, Ziyang, et al.
Published: (2024)
by: Yu, Ziyang, et al.
Published: (2024)
Towards More Accurate Full-Atom Antibody Co-Design
by: Wu, Jiayang, et al.
Published: (2025)
by: Wu, Jiayang, et al.
Published: (2025)
Fast and Accurate Antibody Sequence Design via Structure Retrieval
by: Zhang, Xingyi, et al.
Published: (2025)
by: Zhang, Xingyi, et al.
Published: (2025)
Tokenizing Loops of Antibodies
by: Fang, Ada, et al.
Published: (2025)
by: Fang, Ada, et al.
Published: (2025)
EquiPocket: an E(3)-Equivariant Geometric Graph Neural Network for Ligand Binding Site Prediction
by: Zhang, Yang, et al.
Published: (2023)
by: Zhang, Yang, et al.
Published: (2023)
Guided Generation for Developable Antibodies
by: Zhao, Siqi, et al.
Published: (2025)
by: Zhao, Siqi, et al.
Published: (2025)
Interpretable Enzyme Function Prediction via Residue-Level Detection
by: Yang, Zhao, et al.
Published: (2025)
by: Yang, Zhao, et al.
Published: (2025)
Bayesian Optimization of Antibodies Informed by a Generative Model of Evolving Sequences
by: Amin, Alan Nawzad, et al.
Published: (2024)
by: Amin, Alan Nawzad, et al.
Published: (2024)
Quantum-inspired Reinforcement Learning for Synthesizable Drug Design
by: Wang, Dannong, et al.
Published: (2024)
by: Wang, Dannong, et al.
Published: (2024)
Multi-Scale Representation Learning for Protein Fitness Prediction
by: Zhang, Zuobai, et al.
Published: (2024)
by: Zhang, Zuobai, et al.
Published: (2024)
AbDiffuser: Full-Atom Generation of in vitro Functioning Antibodies
by: Martinkus, Karolis, et al.
Published: (2023)
by: Martinkus, Karolis, et al.
Published: (2023)
SIU: A Million-Scale Structural Small Molecule-Protein Interaction Dataset for Unbiased Bioactivity Prediction
by: Huang, Yanwen, et al.
Published: (2024)
by: Huang, Yanwen, et al.
Published: (2024)
Stable Online and Offline Reinforcement Learning for Antibody CDRH3 Design
by: Vogt, Yannick, et al.
Published: (2023)
by: Vogt, Yannick, et al.
Published: (2023)
BetterBodies: Reinforcement Learning guided Diffusion for Antibody Sequence Design
by: Vogt, Yannick, et al.
Published: (2024)
by: Vogt, Yannick, et al.
Published: (2024)
Antibody DomainBed: Out-of-Distribution Generalization in Therapeutic Protein Design
by: Tagasovska, Nataša, et al.
Published: (2024)
by: Tagasovska, Nataša, et al.
Published: (2024)
MeToken: Uniform Micro-environment Token Boosts Post-Translational Modification Prediction
by: Tan, Cheng, et al.
Published: (2024)
by: Tan, Cheng, et al.
Published: (2024)
Multimodal Regression for Enzyme Turnover Rates Prediction
by: Hu, Bozhen, et al.
Published: (2025)
by: Hu, Bozhen, et al.
Published: (2025)
EnzyCLIP: A Cross-Attention Dual Encoder Framework with Contrastive Learning for Predicting Enzyme Kinetic Constants
by: Khan, Anas Aziz, et al.
Published: (2025)
by: Khan, Anas Aziz, et al.
Published: (2025)
A Cross-Field Fusion Strategy for Drug-Target Interaction Prediction
by: Zhang, Hongzhi, et al.
Published: (2024)
by: Zhang, Hongzhi, et al.
Published: (2024)
ViDTA: Enhanced Drug-Target Affinity Prediction via Virtual Graph Nodes and Attention-based Feature Fusion
by: Li, Minghui, et al.
Published: (2024)
by: Li, Minghui, et al.
Published: (2024)
Curriculum Learning for Biological Sequence Prediction: The Case of De Novo Peptide Sequencing
by: Zhang, Xiang, et al.
Published: (2025)
by: Zhang, Xiang, et al.
Published: (2025)
G4-Attention: Deep Learning Model with Attention for predicting DNA G-Quadruplexes
by: Mukherjee, Shrimon, et al.
Published: (2024)
by: Mukherjee, Shrimon, et al.
Published: (2024)
ImmunoAI: Accelerated Antibody Discovery Using Gradient-Boosted Machine Learning with Thermodynamic-Hydrodynamic Descriptors and 3D Geometric Interface Topology
by: Shivakumar, Shawnak, et al.
Published: (2025)
by: Shivakumar, Shawnak, et al.
Published: (2025)
S$^2$ALM: Sequence-Structure Pre-trained Large Language Model for Comprehensive Antibody Representation Learning
by: Yin, Mingze, et al.
Published: (2024)
by: Yin, Mingze, et al.
Published: (2024)
A Heterogeneous Network-based Contrastive Learning Approach for Predicting Drug-Target Interaction
by: Hu, Junwei, et al.
Published: (2024)
by: Hu, Junwei, et al.
Published: (2024)
Tree Search-Based Evolutionary Bandits for Protein Sequence Optimization
by: Qiu, Jiahao, et al.
Published: (2024)
by: Qiu, Jiahao, et al.
Published: (2024)
Immunogenicity Prediction with Dual Attention Enables Vaccine Target Selection
by: Li, Song, et al.
Published: (2024)
by: Li, Song, et al.
Published: (2024)
Improving Antibody Design with Force-Guided Sampling in Diffusion Models
by: Kulytė, Paulina, et al.
Published: (2024)
by: Kulytė, Paulina, et al.
Published: (2024)
Cross-Gate MLP with Protein Complex Invariant Embedding is A One-Shot Antibody Designer
by: Tan, Cheng, et al.
Published: (2023)
by: Tan, Cheng, et al.
Published: (2023)
MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding
by: Wu, Lirong, et al.
Published: (2024)
by: Wu, Lirong, et al.
Published: (2024)
ZeroDDI: A Zero-Shot Drug-Drug Interaction Event Prediction Method with Semantic Enhanced Learning and Dual-Modal Uniform Alignment
by: Wang, Ziyan, et al.
Published: (2024)
by: Wang, Ziyan, et al.
Published: (2024)
Similar Items
-
CAME-AB: Cross-Modality Attention with Mixture-of-Experts for Antibody Binding Site Prediction
by: Li, Hongzong, et al.
Published: (2025) -
BConformeR: A Conformer Based on Mutual Sampling for Unified Prediction of Continuous and Discontinuous Antibody Binding Sites
by: You, Zhangyu, et al.
Published: (2025) -
TopoBind: Multi-Modal Prediction of Antibody-Antigen Binding Free Energy via Sequence Embeddings and Structural Topology
by: Yu, Ciyuan, et al.
Published: (2025) -
Remodeling Peptide-MHC-TCR Triad Binding as Sequence Fusion for Immunogenicity Prediction
by: Ma, Jiahao, et al.
Published: (2025) -
Physicochemically Informed Dual-Conditioned Generative Model of T-Cell Receptor Variable Regions for Cellular Therapy
by: Ma, Jiahao, et al.
Published: (2025)