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Main Authors: Willis, Samuel, Duckworth, Paul, Simons, Jack, Kalisz, Aleksandra, Sinkovics, Krisztina, Ghenassia, Noam, Surana, Shikha, Oldroyd, Henry T., Stere, Alexandru I., Margineantu, Dragos D, Ek, Carl Henrik, Moss, Henry, Bodin, Erik
Format: Preprint
Published: 2025
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Online Access:https://arxiv.org/abs/2509.23800
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author Willis, Samuel
Duckworth, Paul
Simons, Jack
Kalisz, Aleksandra
Sinkovics, Krisztina
Ghenassia, Noam
Surana, Shikha
Oldroyd, Henry T.
Stere, Alexandru I.
Margineantu, Dragos D
Ek, Carl Henrik
Moss, Henry
Bodin, Erik
author_facet Willis, Samuel
Duckworth, Paul
Simons, Jack
Kalisz, Aleksandra
Sinkovics, Krisztina
Ghenassia, Noam
Surana, Shikha
Oldroyd, Henry T.
Stere, Alexandru I.
Margineantu, Dragos D
Ek, Carl Henrik
Moss, Henry
Bodin, Erik
contents Modern generative AI models, such as diffusion and flow matching models, can sample from rich data distributions. However, many applications, especially in science and engineering, require more than drawing samples from the model distribution: they require searching within this distribution for samples that optimise task-specific criteria. In this work, we propose O3 (Optimisation Over the Outputs of Generative Models), a method for sample-efficient black-box optimisation over continuous-variable diffusion and flow-matching models. O3 is built around surrogate latent spaces: low-dimensional Euclidean embeddings that can be extracted from a generative model without additional training. The resulting representations have controllable dimensionality and support the direct application of standard optimisation algorithms. We show, on image and protein design tasks, that surrogate-space optimisation finds substantially higher-scoring samples than standard sampling or optimisation in the original latent space. Our method is model- and optimiser-agnostic, incurs negligible additional cost over standard generation, and requires no retraining or fine-tuning of the generative model.
format Preprint
id arxiv_https___arxiv_org_abs_2509_23800
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle Sample-Efficient Optimisation over the Outputs of Generative Models
Willis, Samuel
Duckworth, Paul
Simons, Jack
Kalisz, Aleksandra
Sinkovics, Krisztina
Ghenassia, Noam
Surana, Shikha
Oldroyd, Henry T.
Stere, Alexandru I.
Margineantu, Dragos D
Ek, Carl Henrik
Moss, Henry
Bodin, Erik
Machine Learning
Modern generative AI models, such as diffusion and flow matching models, can sample from rich data distributions. However, many applications, especially in science and engineering, require more than drawing samples from the model distribution: they require searching within this distribution for samples that optimise task-specific criteria. In this work, we propose O3 (Optimisation Over the Outputs of Generative Models), a method for sample-efficient black-box optimisation over continuous-variable diffusion and flow-matching models. O3 is built around surrogate latent spaces: low-dimensional Euclidean embeddings that can be extracted from a generative model without additional training. The resulting representations have controllable dimensionality and support the direct application of standard optimisation algorithms. We show, on image and protein design tasks, that surrogate-space optimisation finds substantially higher-scoring samples than standard sampling or optimisation in the original latent space. Our method is model- and optimiser-agnostic, incurs negligible additional cost over standard generation, and requires no retraining or fine-tuning of the generative model.
title Sample-Efficient Optimisation over the Outputs of Generative Models
topic Machine Learning
url https://arxiv.org/abs/2509.23800