Winning the Pruning Gamble: A Unified Approach to Joint Sample and Token Pruning for Efficient Supervised Fine-Tuning

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Main Authors: Wang, Shaobo, Wang, Jiaming, Zhang, Jiajun, Wang, Cong, Min, Yue, Wen, Zichen, Ren, Xingzhang, Huang, Fei, Jiang, Huiqiang, Lin, Junyang, Liu, Dayiheng, Zhang, Linfeng
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Published: 2025
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author Wang, Shaobo
Wang, Jiaming
Zhang, Jiajun
Wang, Cong
Min, Yue
Wen, Zichen
Ren, Xingzhang
Huang, Fei
Jiang, Huiqiang
Lin, Junyang
Liu, Dayiheng
Zhang, Linfeng
author_facet Wang, Shaobo
Wang, Jiaming
Zhang, Jiajun
Wang, Cong
Min, Yue
Wen, Zichen
Ren, Xingzhang
Huang, Fei
Jiang, Huiqiang
Lin, Junyang
Liu, Dayiheng
Zhang, Linfeng
contents As supervised fine-tuning (SFT) evolves from a lightweight post-training step into a compute-intensive phase rivaling mid-training in scale, data efficiency has become critical for aligning large language models (LLMs) under tight budgets. Existing data pruning methods suffer from a fragmented design: they operate either at the sample level or the token level in isolation, failing to jointly optimize both dimensions. This disconnect leads to significant inefficiencies--high-value samples may still contain redundant tokens, while token-level pruning often discards crucial instructional or corrective signals embedded in individual examples. To address this bottleneck, we introduce the Error-Uncertainty (EU) Plane, a diagnostic framework that jointly characterizes the heterogeneous utility of training data across samples and tokens. Guided by this insight, we propose Quadrant-based Tuning (Q-Tuning), a unified framework that strategically coordinates sample pruning and token pruning. Q-Tuning employs a two-stage strategy: first, it performs sample-level triage to retain examples rich in informative misconceptions or calibration signals; second, it applies an asymmetric token-pruning policy, using a context-aware scoring mechanism to trim less salient tokens exclusively from misconception samples while preserving calibration samples in their entirety. Our method sets a new state of the art across five diverse benchmarks. Remarkably, on SmolLM2-1.7B, Q-Tuning achieves a +38\% average improvement over the full-data SFT baseline using only 12.5\% of the original training data. As the first dynamic pruning approach to consistently outperform full-data training, Q-Tuning provides a practical and scalable blueprint for maximizing data utilization in budget-constrained LLM SFT.
format Preprint
id arxiv_https___arxiv_org_abs_2509_23873
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle Winning the Pruning Gamble: A Unified Approach to Joint Sample and Token Pruning for Efficient Supervised Fine-Tuning
Wang, Shaobo
Wang, Jiaming
Zhang, Jiajun
Wang, Cong
Min, Yue
Wen, Zichen
Ren, Xingzhang
Huang, Fei
Jiang, Huiqiang
Lin, Junyang
Liu, Dayiheng
Zhang, Linfeng
Computation and Language
As supervised fine-tuning (SFT) evolves from a lightweight post-training step into a compute-intensive phase rivaling mid-training in scale, data efficiency has become critical for aligning large language models (LLMs) under tight budgets. Existing data pruning methods suffer from a fragmented design: they operate either at the sample level or the token level in isolation, failing to jointly optimize both dimensions. This disconnect leads to significant inefficiencies--high-value samples may still contain redundant tokens, while token-level pruning often discards crucial instructional or corrective signals embedded in individual examples. To address this bottleneck, we introduce the Error-Uncertainty (EU) Plane, a diagnostic framework that jointly characterizes the heterogeneous utility of training data across samples and tokens. Guided by this insight, we propose Quadrant-based Tuning (Q-Tuning), a unified framework that strategically coordinates sample pruning and token pruning. Q-Tuning employs a two-stage strategy: first, it performs sample-level triage to retain examples rich in informative misconceptions or calibration signals; second, it applies an asymmetric token-pruning policy, using a context-aware scoring mechanism to trim less salient tokens exclusively from misconception samples while preserving calibration samples in their entirety. Our method sets a new state of the art across five diverse benchmarks. Remarkably, on SmolLM2-1.7B, Q-Tuning achieves a +38\% average improvement over the full-data SFT baseline using only 12.5\% of the original training data. As the first dynamic pruning approach to consistently outperform full-data training, Q-Tuning provides a practical and scalable blueprint for maximizing data utilization in budget-constrained LLM SFT.
title Winning the Pruning Gamble: A Unified Approach to Joint Sample and Token Pruning for Efficient Supervised Fine-Tuning
topic Computation and Language
url https://arxiv.org/abs/2509.23873