Integrative modelling of biomolecular dynamics
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arXiv
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| Format: | Preprint |
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2025
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| _version_ | 1866909818803978240 |
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| author | Gusew, Daria Hansen, Carl G. Henning Lindorff-Larsen, Kresten |
| author_facet | Gusew, Daria Hansen, Carl G. Henning Lindorff-Larsen, Kresten |
| contents | Much of our mechanistic understanding of the functions of biological macromolecules is based on static structural experiments, which can be modelled either as single structures or conformational ensembles. While these provide us with invaluable insights, they do not directly reveal that molecules are inherently dynamic. Advances in time-dependent and time-resolved experimental methods have made it possible to capture the dynamics of biomolecules at increasingly higher spatial and temporal resolutions. To complement these, computational models can represent the structural and dynamical behaviour of biomolecules at atomistic resolution and femtosecond timescale, and are therefore useful to interpret these experiments. Here, we review the progress in integrating simulations with dynamical experiments, focusing on the combination of simulations with time-resolved and time-dependent experimental data. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2510_01108 |
| institution | arXiv |
| publishDate | 2025 |
| record_format | arxiv |
| spellingShingle | Integrative modelling of biomolecular dynamics Gusew, Daria Hansen, Carl G. Henning Lindorff-Larsen, Kresten Biomolecules Much of our mechanistic understanding of the functions of biological macromolecules is based on static structural experiments, which can be modelled either as single structures or conformational ensembles. While these provide us with invaluable insights, they do not directly reveal that molecules are inherently dynamic. Advances in time-dependent and time-resolved experimental methods have made it possible to capture the dynamics of biomolecules at increasingly higher spatial and temporal resolutions. To complement these, computational models can represent the structural and dynamical behaviour of biomolecules at atomistic resolution and femtosecond timescale, and are therefore useful to interpret these experiments. Here, we review the progress in integrating simulations with dynamical experiments, focusing on the combination of simulations with time-resolved and time-dependent experimental data. |
| title | Integrative modelling of biomolecular dynamics |
| topic | Biomolecules |
| url | https://arxiv.org/abs/2510.01108 |