Copertina

RawBench: A Comprehensive Benchmarking Framework for Raw Nanopore Signal Analysis Techniques

Fuente: arXiv

Salvato in:

Dettagli Bibliografici
Autori principali:	Eris, Furkan, McConnell, Ulysse, Firtina, Can, Mutlu, Onur
Natura:	Preprint
Pubblicazione:	2025
Soggetti:	Genomics Quantitative Methods
Accesso online:	Acceder al recurso
Tags:	Aggiungi Tag Nessun Tag, puoi essere il primo ad aggiungerne!!

Documenti analoghi

RawHash2: Mapping Raw Nanopore Signals Using Hash-Based Seeding and Adaptive Quantization
di: Firtina, Can, et al.
Pubblicazione: (2023)

CRANE: Correcting Errors in Raw Nanopore Signals Using Hidden Markov Models
di: Ambrozak, Simon, et al.
Pubblicazione: (2026)

RawAlign: Accurate, Fast, and Scalable Raw Nanopore Signal Mapping via Combining Seeding and Alignment
di: Lindegger, Joël, et al.
Pubblicazione: (2023)

SequenceLab: A Comprehensive Benchmark of Computational Methods for Comparing Genomic Sequences
di: Rumpf, Maximilian-David, et al.
Pubblicazione: (2023)

Rawsamble: Overlapping and Assembling Raw Nanopore Signals using a Hash-based Seeding Mechanism
di: Firtina, Can, et al.
Pubblicazione: (2024)

MetaTrinity: Enabling Fast Metagenomic Classification via Seed Counting and Edit Distance Approximation
di: Gollwitzer, Arvid E., et al.
Pubblicazione: (2023)

Genome-on-Diet: Taming Large-Scale Genomic Analyses via Sparsified Genomics
di: Alser, Mohammed, et al.
Pubblicazione: (2022)

SpikGPT: A High-Accuracy and Interpretable Spiking Attention Framework for Single-Cell Annotation
di: Huang, Min, et al.
Pubblicazione: (2025)

CEP-IP: An Explainable Framework for Cell Subpopulation Identification in Single-cell Transcriptomics
di: Wong, Kah Keng
Pubblicazione: (2025)

Microbial and Viral Ecology Analysis for Metagenomic Data
di: Kosmopoulos, James C., et al.
Pubblicazione: (2024)

A comprehensive comparison of tools for fitting mutational signatures
di: Medo, Matúš, et al.
Pubblicazione: (2023)

A Bayesian approach to model uncertainty in single-cell genomic data
di: Ren, Shanshan, et al.
Pubblicazione: (2025)

A CNN Approach to Polygenic Risk Prediction of Kidney Stone Formation
di: Salem, Amr, et al.
Pubblicazione: (2024)

MARADONER: Motif Activity Response Analysis Done Right
di: Meshcheryakov, Georgy, et al.
Pubblicazione: (2026)

pHapCompass: Probabilistic Assembly and Uncertainty Quantification of Polyploid Haplotype Phase
di: Hosseini, Marjan, et al.
Pubblicazione: (2025)

Viral Dark Matter: Illuminating Protein Function, Ecology, and Biotechnological Promises
di: Kosmopoulos, James C., et al.
Pubblicazione: (2025)

Refined HLA Linkage Disequilibrium Architectures of World Populations by a Novel Allelic Correlation Measure
di: Zhang, Fei, et al.
Pubblicazione: (2025)

Single-Cell Proteomics Using Mass Spectrometry
di: Momenzadeh, Amanda, et al.
Pubblicazione: (2025)

Phospho-Proteomics Method Optimization and Application to Stimulated Jurkat Cells
di: Ndungu, Teresia, et al.
Pubblicazione: (2025)

From Mutation to Degradation: Predicting Nonsense-Mediated Decay with NMDEP
di: Saadat, Ali, et al.
Pubblicazione: (2025)

Fine-tuning the ESM2 protein language model to understand the functional impact of missense variants
di: Saadat, Ali, et al.
Pubblicazione: (2024)

MotifbreakR v2: extended capability and database integration
di: Coetzee, Simon G., et al.
Pubblicazione: (2024)

DNA Language Model and Interpretable Graph Neural Network Identify Genes and Pathways Involved in Rare Diseases
di: Saadat, Ali, et al.
Pubblicazione: (2024)

Methylation Operation Wizard (MeOW): Identification of differentially methylated regions in long-read sequencing data
di: Zalusky, Miranda PG, et al.
Pubblicazione: (2024)

Deciphering regulatory architectures from synthetic single-cell expression patterns
di: Pan, Rosalind Wenshan, et al.
Pubblicazione: (2024)

Objectively Evaluating the Reliability of Cell Type Annotation Using LLM-Based Strategies
di: Ye, Wenjin, et al.
Pubblicazione: (2024)

Proteome-wide prediction of mode of inheritance and molecular mechanism underlying genetic diseases using structural interactomics
di: Saadat, Ali, et al.
Pubblicazione: (2024)

DiMA: Sequence Diversity Dynamics Analyser for Viruses
di: Tharanga, Shan, et al.
Pubblicazione: (2022)

CIBRA identifies genomic alterations with a system-wide impact on tumor biology
di: Lakbir, Soufyan, et al.
Pubblicazione: (2024)

Lightning-fast adaptive immune receptor similarity search by symmetric deletion lookup
di: Chotisorayuth, Touchchai, et al.
Pubblicazione: (2024)

Harnessing the Potential of Spatial Statistics for Spatial Omics Data with pasta
di: Emons, Martin, et al.
Pubblicazione: (2024)

Sweetwater: An interpretable and adaptive autoencoder for efficient tissue deconvolution
di: de la Fuente, Jesus, et al.
Pubblicazione: (2023)

Pathway Tools version 28.0: Integrated Software for Pathway/Genome Informatics and Systems Biology
di: Karp, Peter D., et al.
Pubblicazione: (2015)

StateXDiff: Cell State-Contextualized Multimodal Diffusion for Single-Cell Perturbation Prediction
di: Shi, Peiting, et al.
Pubblicazione: (2026)

MetaCompass: Reference-guided Assembly of Metagenomes
di: Luan, Tu, et al.
Pubblicazione: (2024)

OLAF: An Open Life Science Analysis Framework for Conversational Bioinformatics Powered by Large Language Models
di: Riffle, Dylan, et al.
Pubblicazione: (2025)

A Statistical Framework for Co-Mediators of Zero-Inflated Single-Cell RNA-Seq Data
di: Ahn, Seungjun, et al.
Pubblicazione: (2025)

No Generation without Representation: Efficient Causal Protein Language Models Enable Zero-Shot Fitness Estimation
di: Eris, Furkan
Pubblicazione: (2026)

BarcodeMamba: State Space Models for Biodiversity Analysis
di: Gao, Tiancheng, et al.
Pubblicazione: (2024)

The Multivariate SEM-PGS Model: Using Polygenic Scores to Investigate Cross-Trait Genetic Nurture and Assortative Mating
di: Lyu, Xuanyu, et al.
Pubblicazione: (2025)