Attending on Multilevel Structure of Proteins enables Accurate Prediction of Cold-Start Drug-Target Interactions
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arXiv
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| Main Authors: | Zhang, Ziying, Wang, Yaqing, Sun, Yuxuan, Ye, Min, Yao, Quanming |
|---|---|
| Format: | Preprint |
| Published: |
2025
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| Subjects: | |
| Online Access: | |
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