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Main Authors: Cao, Yang, Song, Zhao, Zhang, Jiahao, Zhao, Jiale
Format: Preprint
Published: 2025
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Online Access:https://arxiv.org/abs/2510.05494
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author Cao, Yang
Song, Zhao
Zhang, Jiahao
Zhao, Jiale
author_facet Cao, Yang
Song, Zhao
Zhang, Jiahao
Zhao, Jiale
contents Graph neural networks (GNNs) have become a core paradigm for learning on relational data. In materials science, equivariant GNNs (EGNNs) have emerged as a compelling backbone for crystalline-structure prediction, owing to their ability to respect Euclidean symmetries and periodic boundary conditions. Despite strong empirical performance, their expressive power in periodic, symmetry-constrained settings remains poorly understood. This work characterizes the intrinsic computational and expressive limits of EGNNs for crystalline-structure prediction through a circuit-complexity lens. We analyze the computations carried out by EGNN layers acting on node features, atomic coordinates, and lattice matrices, and prove that, under polynomial precision, embedding width $d=O(n)$ for $n$ nodes, $O(1)$ layers, and $O(1)$-depth, $O(n)$-width MLP instantiations of the message/update/readout maps, these models admit a simulation by a uniform $\mathsf{TC}^0$ threshold-circuit family of polynomial size (with an explicit constant-depth bound). Situating EGNNs within $\mathsf{TC}^0$ provides a concrete ceiling on the decision and prediction problems solvable by such architectures under realistic resource constraints and clarifies which architectural modifications (e.g., increased depth, richer geometric primitives, or wider layers) are required to transcend this regime. The analysis complements Weisfeiler-Lehman style results that do not directly transfer to periodic crystals, and offers a complexity-theoretic foundation for symmetry-aware graph learning on crystalline systems.
format Preprint
id arxiv_https___arxiv_org_abs_2510_05494
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle Fundamental Limits of Crystalline Equivariant Graph Neural Networks: A Circuit Complexity Perspective
Cao, Yang
Song, Zhao
Zhang, Jiahao
Zhao, Jiale
Machine Learning
Computational Complexity
Graph neural networks (GNNs) have become a core paradigm for learning on relational data. In materials science, equivariant GNNs (EGNNs) have emerged as a compelling backbone for crystalline-structure prediction, owing to their ability to respect Euclidean symmetries and periodic boundary conditions. Despite strong empirical performance, their expressive power in periodic, symmetry-constrained settings remains poorly understood. This work characterizes the intrinsic computational and expressive limits of EGNNs for crystalline-structure prediction through a circuit-complexity lens. We analyze the computations carried out by EGNN layers acting on node features, atomic coordinates, and lattice matrices, and prove that, under polynomial precision, embedding width $d=O(n)$ for $n$ nodes, $O(1)$ layers, and $O(1)$-depth, $O(n)$-width MLP instantiations of the message/update/readout maps, these models admit a simulation by a uniform $\mathsf{TC}^0$ threshold-circuit family of polynomial size (with an explicit constant-depth bound). Situating EGNNs within $\mathsf{TC}^0$ provides a concrete ceiling on the decision and prediction problems solvable by such architectures under realistic resource constraints and clarifies which architectural modifications (e.g., increased depth, richer geometric primitives, or wider layers) are required to transcend this regime. The analysis complements Weisfeiler-Lehman style results that do not directly transfer to periodic crystals, and offers a complexity-theoretic foundation for symmetry-aware graph learning on crystalline systems.
title Fundamental Limits of Crystalline Equivariant Graph Neural Networks: A Circuit Complexity Perspective
topic Machine Learning
Computational Complexity
url https://arxiv.org/abs/2510.05494