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| Main Authors: | , , , |
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| Format: | Preprint |
| Published: |
2025
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| Subjects: | |
| Online Access: | https://arxiv.org/abs/2510.06037 |
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| _version_ | 1866914079635931136 |
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| author | Coronas, Luis Enrique Timr, Stepan Sterpone, Fabio Franzese, Giancarlo |
| author_facet | Coronas, Luis Enrique Timr, Stepan Sterpone, Fabio Franzese, Giancarlo |
| contents | Biological processes like the sequestration of Superoxide Dismutase 1 (SOD1) into biomolecular condensates such as FUS and stress granules are essential to understanding disease mechanisms, including amyotrophic lateral sclerosis (ALS). Our study demonstrates that the hydration environment is crucial in these processes. Using the advanced CVF water model, which captures hydrogen-bond networks at the molecular level, we show how water greatly impacts SOD1's behavior, residency times, and transition rates between different associative states. Importantly, when water is included to hydrate an implicit solvent model (OPEP), we gain a new perspective on the free energy landscape of the system, leading to a conclusion that clarifies that suggested by OPEP alone. While the OPEP model indicated that Bovine Serum Albumin (BSA) crowders reduce SOD1's partition coefficient (PC) mainly due to nonspecific interactions with BSA, our enhanced explicit-water approach reveals that the hydration entropy behavior in BSA drives the observed decrease in PC. This highlights that explicitly modeling water is essential for accurately understanding protein-crowder interactions and their biological relevance, emphasizing water's role in cellular phase separation and disease-related processes. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2510_06037 |
| institution | arXiv |
| publishDate | 2025 |
| record_format | arxiv |
| spellingShingle | Unveiling the entropic role of hydration water in SOD1 partitioning within FUS condensate Coronas, Luis Enrique Timr, Stepan Sterpone, Fabio Franzese, Giancarlo Statistical Mechanics Biological processes like the sequestration of Superoxide Dismutase 1 (SOD1) into biomolecular condensates such as FUS and stress granules are essential to understanding disease mechanisms, including amyotrophic lateral sclerosis (ALS). Our study demonstrates that the hydration environment is crucial in these processes. Using the advanced CVF water model, which captures hydrogen-bond networks at the molecular level, we show how water greatly impacts SOD1's behavior, residency times, and transition rates between different associative states. Importantly, when water is included to hydrate an implicit solvent model (OPEP), we gain a new perspective on the free energy landscape of the system, leading to a conclusion that clarifies that suggested by OPEP alone. While the OPEP model indicated that Bovine Serum Albumin (BSA) crowders reduce SOD1's partition coefficient (PC) mainly due to nonspecific interactions with BSA, our enhanced explicit-water approach reveals that the hydration entropy behavior in BSA drives the observed decrease in PC. This highlights that explicitly modeling water is essential for accurately understanding protein-crowder interactions and their biological relevance, emphasizing water's role in cellular phase separation and disease-related processes. |
| title | Unveiling the entropic role of hydration water in SOD1 partitioning within FUS condensate |
| topic | Statistical Mechanics |
| url | https://arxiv.org/abs/2510.06037 |