The Effect of Chlorine Substitution on Rotational Speed and Light Absorption of Second Generation Molecular Motors
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| Format: | Preprint |
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2025
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| _version_ | 1866918157514440704 |
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| author | Tambovtsev, Ivan Kristinsson, Óskar Jónsson, Hannes |
| author_facet | Tambovtsev, Ivan Kristinsson, Óskar Jónsson, Hannes |
| contents | The effect of substituting a hydrogen atom by a chlorine atom or a methyl group by a trichloromethyl (CCl3) group at the stereogenic center of light-driven second generation molecular motors is calculated in order to assess the effect on rotational speed and the separation of the absorption peaks of the isomers. While experimental and theoretical studies have previously been carried out for fluorine substitution, this is the first study of chlorine substitution. Five well-characterized base molecules are studied and the trends are compared with the effect of fluorine substitution. The trichloromethyl substitution is found to accelerate the rotation more than a trifluoromethyl (CF3) substitution by reducing the life-time of the metastable state, due to larger steric hindrance in the metastable state than in the transition state for the thermal helix inversion (THI). A larger increase in the separation of the absorption peaks of the two isomers is also obtained. The Cl atom substitution, however, changes the energy landscape significantly, making the M isomer lower in energy than the P isomer, and raising the energy barrier for THI beyond that of the back transition, thus quenching the rotation. |
| format | Preprint |
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arxiv_https___arxiv_org_abs_2510_08165 |
| institution | arXiv |
| publishDate | 2025 |
| record_format | arxiv |
| spellingShingle | The Effect of Chlorine Substitution on Rotational Speed and Light Absorption of Second Generation Molecular Motors Tambovtsev, Ivan Kristinsson, Óskar Jónsson, Hannes Chemical Physics The effect of substituting a hydrogen atom by a chlorine atom or a methyl group by a trichloromethyl (CCl3) group at the stereogenic center of light-driven second generation molecular motors is calculated in order to assess the effect on rotational speed and the separation of the absorption peaks of the isomers. While experimental and theoretical studies have previously been carried out for fluorine substitution, this is the first study of chlorine substitution. Five well-characterized base molecules are studied and the trends are compared with the effect of fluorine substitution. The trichloromethyl substitution is found to accelerate the rotation more than a trifluoromethyl (CF3) substitution by reducing the life-time of the metastable state, due to larger steric hindrance in the metastable state than in the transition state for the thermal helix inversion (THI). A larger increase in the separation of the absorption peaks of the two isomers is also obtained. The Cl atom substitution, however, changes the energy landscape significantly, making the M isomer lower in energy than the P isomer, and raising the energy barrier for THI beyond that of the back transition, thus quenching the rotation. |
| title | The Effect of Chlorine Substitution on Rotational Speed and Light Absorption of Second Generation Molecular Motors |
| topic | Chemical Physics |
| url | https://arxiv.org/abs/2510.08165 |