Designing ReLU Generative Networks to Enumerate Trees with a Given Tree Edit Distance
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| Format: | Preprint |
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2025
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| _version_ | 1866911417200803840 |
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| author | Ghafoor, Mamoona Akutsu, Tatsuya |
| author_facet | Ghafoor, Mamoona Akutsu, Tatsuya |
| contents | The generation of trees with a specified tree edit distance has significant applications across various fields, including computational biology, structured data analysis, and image processing. Recently, generative networks have been increasingly employed to synthesize new data that closely resembles the original datasets. However, the appropriate size and depth of generative networks required to generate data with a specified tree edit distance remain unclear. In this paper, we theoretically establish the existence and construction of generative networks capable of producing trees similar to a given tree with respect to the tree edit distance. Specifically, for a given rooted, ordered, and vertex-labeled tree T of size n + 1 with labels from an alphabet Σ, and a non-negative integer d, we prove that all rooted, ordered, and vertex-labeled trees over Σwith tree edit distance at most d from T can be generated using a ReLU-based generative network with size O(n^3 ) and constant depth. The proposed networks were implemented and evaluated for generating trees with up to 21 nodes. Due to their deterministic architecture, the networks successfully generated all valid trees within the specified tree edit distance. In contrast, state-of-the-art graph generative models GraphRNN and GraphGDP, which rely on non-deterministic mechanisms, produced significantly fewer valid trees, achieving validation rates of only up to 35% and 48%, respectively. These findings provide a theoretical foundation towards construction of compact generative models and open new directions for exact and valid tree-structured data generation. An implementation of the proposed networks is available at https://github.com/MGANN-KU/TreeGen_ReLUNetworks. |
| format | Preprint |
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arxiv_https___arxiv_org_abs_2510_10706 |
| institution | arXiv |
| publishDate | 2025 |
| record_format | arxiv |
| spellingShingle | Designing ReLU Generative Networks to Enumerate Trees with a Given Tree Edit Distance Ghafoor, Mamoona Akutsu, Tatsuya Machine Learning Discrete Mathematics The generation of trees with a specified tree edit distance has significant applications across various fields, including computational biology, structured data analysis, and image processing. Recently, generative networks have been increasingly employed to synthesize new data that closely resembles the original datasets. However, the appropriate size and depth of generative networks required to generate data with a specified tree edit distance remain unclear. In this paper, we theoretically establish the existence and construction of generative networks capable of producing trees similar to a given tree with respect to the tree edit distance. Specifically, for a given rooted, ordered, and vertex-labeled tree T of size n + 1 with labels from an alphabet Σ, and a non-negative integer d, we prove that all rooted, ordered, and vertex-labeled trees over Σwith tree edit distance at most d from T can be generated using a ReLU-based generative network with size O(n^3 ) and constant depth. The proposed networks were implemented and evaluated for generating trees with up to 21 nodes. Due to their deterministic architecture, the networks successfully generated all valid trees within the specified tree edit distance. In contrast, state-of-the-art graph generative models GraphRNN and GraphGDP, which rely on non-deterministic mechanisms, produced significantly fewer valid trees, achieving validation rates of only up to 35% and 48%, respectively. These findings provide a theoretical foundation towards construction of compact generative models and open new directions for exact and valid tree-structured data generation. An implementation of the proposed networks is available at https://github.com/MGANN-KU/TreeGen_ReLUNetworks. |
| title | Designing ReLU Generative Networks to Enumerate Trees with a Given Tree Edit Distance |
| topic | Machine Learning Discrete Mathematics |
| url | https://arxiv.org/abs/2510.10706 |