Cover Image

Precision Design of Cyclic Peptides using AlphaFold

Fuente: arXiv

Saved in:

Bibliographic Details
Main Author:	Au, Cheuk Sau
Format:	Preprint
Published:	2025
Subjects:	Biomolecules
Online Access:	Acceder al recurso
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

Inverse problems with experiment-guided AlphaFold
by: Maddipatla, Advaith, et al.
Published: (2025)

AlphaFold two years on: validation and impact
by: Kovalevskiy, Oleg, et al.
Published: (2024)

AlphaFold Database Debiasing for Robust Inverse Folding
by: Tan, Cheng, et al.
Published: (2025)

Applications of Knot Theory for the Improvement of the AlphaFold Protein Database
by: Jahagirdar, Pranshu
Published: (2024)

State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences
by: Xing, Enming, et al.
Published: (2025)

AlphaFold2 for protein structure prediction: Best practices and critical analyses
by: Radjasandirane, Ragousandirane, et al.
Published: (2024)

AlphaFold Meets Flow Matching for Generating Protein Ensembles
by: Jing, Bowen, et al.
Published: (2024)

Leveraging Sequence Purification for Accurate Prediction of Multiple Conformational States with AlphaFold2
by: Xing, Enming, et al.
Published: (2025)

Proteins with alternative folds reveal blind spots in AlphaFold-based protein structure prediction
by: Chakravarty, Devlina, et al.
Published: (2024)

Characterizing the Conformational States of G Protein Coupled Receptors Generated with AlphaFold
by: Chib, Garima, et al.
Published: (2025)

Exploring AlphaFold 3 for CD47 Antibody-Antigen Binding Affinity: An Unexpected Discovery of Reverse docking
by: Xu, Yiyang, et al.
Published: (2025)

From Prediction to Simulation: AlphaFold 3 as a Differentiable Framework for Structural Biology
by: Abbaszadeh, Alireza, et al.
Published: (2025)

Rapid response to fast viral evolution using AlphaFold 3-assisted topological deep learning
by: Wee, JunJie, et al.
Published: (2024)

AF2-Mutation: Adversarial Sequence Mutations against AlphaFold2 on Protein Tertiary Structure Prediction
by: Yuan, Zhongju, et al.
Published: (2023)

Targeting Melanoma-Specific Tyrosinase: Cyclic Peptide Disrupts Actin Dynamics for Precision Apoptosis Induction
by: Zhao, Ruoyang, et al.
Published: (2025)

APACE: AlphaFold2 and advanced computing as a service for accelerated discovery in biophysics
by: Park, Hyun, et al.
Published: (2023)

Benchmarking AlphaFold3's protein-protein complex accuracy and machine learning prediction reliability for binding free energy changes upon mutation
by: Wee, JunJie, et al.
Published: (2024)

Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling
by: Zhou, Xiangxin, et al.
Published: (2025)

DL4Proteins Jupyter Notebooks Teach how to use Artificial Intelligence for Biomolecular Structure Prediction and Design
by: Chungyoun, Michael, et al.
Published: (2025)

Full-Atom Peptide Design with Geometric Latent Diffusion
by: Kong, Xiangzhe, et al.
Published: (2024)

Fold-switching Proteins
by: Chakravarty, Devlina, et al.
Published: (2025)

Score-Based Generative Models for Designing Binding Peptide Backbones
by: Boom, John D, et al.
Published: (2023)

Decoding How Proteins Fold
by: Vila, Jorge
Published: (2025)

Target-Specific De Novo Peptide Binder Design with DiffPepBuilder
by: Wang, Fanhao, et al.
Published: (2024)

Interface-Driven Peptide Folding: Quantum Computations on Simulated Membrane Surfaces
by: Conde-Torres, Daniel, et al.
Published: (2024)

SeedFold: Scaling Biomolecular Structure Prediction
by: Zhou, Yi, et al.
Published: (2025)

Fold-switching proteins push the boundaries of conformational ensemble prediction
by: Lee, Myeongsang, et al.
Published: (2026)

HelixDesign-Antibody: A Scalable Production-Grade Platform for Antibody Design Built on HelixFold3
by: Gao, Jie, et al.
Published: (2025)

De novo design of high-affinity protein binders with AlphaProteo
by: Zambaldi, Vinicius, et al.
Published: (2024)

RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching
by: Nori, Divya, et al.
Published: (2024)

IntFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction
by: The IntFold Team, et al.
Published: (2025)

Reshaping Biomolecular Structure Prediction through Strategic Conformational Exploration with HelixFold-S1
by: Liu, Lihang, et al.
Published: (2025)

RiboDiffusion: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models
by: Huang, Han, et al.
Published: (2024)

AntiFold: Improved antibody structure-based design using inverse folding
by: Høie, Magnus Haraldson, et al.
Published: (2024)

Minimal-Action Discrete Schrödinger Bridge Matching for Peptide Sequence Design
by: Goel, Shrey, et al.
Published: (2026)

TumorHoPe2: An updated database for Tumor Homing Peptides
by: Kashyap, Diksha, et al.
Published: (2025)

Mechanisms of AI Protein Folding in ESMFold
by: Lu, Kevin, et al.
Published: (2026)

NS-Pep: De novo Peptide Design with Non-Standard Amino Acids
by: Guo, Tao, et al.
Published: (2025)

Peptide Vaccine Design by Evolutionary Multi-Objective Optimization
by: Liu, Dan-Xuan, et al.
Published: (2024)

Remodeling Peptide-MHC-TCR Triad Binding as Sequence Fusion for Immunogenicity Prediction
by: Ma, Jiahao, et al.
Published: (2025)