Modeling Adoptive Cell Therapy in Bladder Cancer from Sparse Biological Data using PINNs
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arXiv
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| Format: | Preprint |
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2025
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| author | Olumoyin, Kayode Rejniak, Katarzyna |
| author_facet | Olumoyin, Kayode Rejniak, Katarzyna |
| contents | Physics-informed neural networks (PINNs) are neural networks that embed the laws of dynamical systems modeled by differential equations into their loss function as constraints. In this work, we present a PINN framework applied to oncology. Here, we seek to learn time-varying interactions due to a combination therapy in a tumor microenvironment. In oncology, experimental data are often sparse and composed of a few time points of tumor volume. By embedding inductive biases derived from prior information about a dynamical system, we extend the physics-informed neural networks (PINN) and incorporate observed biological constraints as regularization agents. The modified PINN algorithm is able to steer itself to a reasonable solution and can generalize well with only a few training examples. We demonstrate the merit of our approach by learning the dynamics of treatment applied intermittently in an ordinary differential equation (ODE) model of a combination therapy. The algorithm yields a solution to the ODE and time-varying forms of some of the ODE model parameters. We demonstrate a strong convergence using metrics such as the mean squared error (MSE), mean absolute error (MAE), and mean absolute percentage error (MAPE). |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2510_13431 |
| institution | arXiv |
| publishDate | 2025 |
| record_format | arxiv |
| spellingShingle | Modeling Adoptive Cell Therapy in Bladder Cancer from Sparse Biological Data using PINNs Olumoyin, Kayode Rejniak, Katarzyna Machine Learning Cell Behavior Populations and Evolution Physics-informed neural networks (PINNs) are neural networks that embed the laws of dynamical systems modeled by differential equations into their loss function as constraints. In this work, we present a PINN framework applied to oncology. Here, we seek to learn time-varying interactions due to a combination therapy in a tumor microenvironment. In oncology, experimental data are often sparse and composed of a few time points of tumor volume. By embedding inductive biases derived from prior information about a dynamical system, we extend the physics-informed neural networks (PINN) and incorporate observed biological constraints as regularization agents. The modified PINN algorithm is able to steer itself to a reasonable solution and can generalize well with only a few training examples. We demonstrate the merit of our approach by learning the dynamics of treatment applied intermittently in an ordinary differential equation (ODE) model of a combination therapy. The algorithm yields a solution to the ODE and time-varying forms of some of the ODE model parameters. We demonstrate a strong convergence using metrics such as the mean squared error (MSE), mean absolute error (MAE), and mean absolute percentage error (MAPE). |
| title | Modeling Adoptive Cell Therapy in Bladder Cancer from Sparse Biological Data using PINNs |
| topic | Machine Learning Cell Behavior Populations and Evolution |
| url | https://arxiv.org/abs/2510.13431 |