Post-Processing Methods for Improving Accuracy in MRI Inpainting

Fuente: arXiv
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Main Authors: Kulkarni, Nishad, Iyer, Krithika, Tapp, Austin, Parida, Abhijeet, Capellán-Martín, Daniel, Jiang, Zhifan, Ledesma-Carbayo, María J., Anwar, Syed Muhammad, Linguraru, Marius George
Format: Preprint
Published: 2025
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author Kulkarni, Nishad
Iyer, Krithika
Tapp, Austin
Parida, Abhijeet
Capellán-Martín, Daniel
Jiang, Zhifan
Ledesma-Carbayo, María J.
Anwar, Syed Muhammad
Linguraru, Marius George
author_facet Kulkarni, Nishad
Iyer, Krithika
Tapp, Austin
Parida, Abhijeet
Capellán-Martín, Daniel
Jiang, Zhifan
Ledesma-Carbayo, María J.
Anwar, Syed Muhammad
Linguraru, Marius George
contents Magnetic Resonance Imaging (MRI) is the primary imaging modality used in the diagnosis, assessment, and treatment planning for brain pathologies. However, most automated MRI analysis tools, such as segmentation and registration pipelines, are optimized for healthy anatomies and often fail when confronted with large lesions such as tumors. To overcome this, image inpainting techniques aim to locally synthesize healthy brain tissues in tumor regions, enabling the reliable application of general-purpose tools. In this work, we systematically evaluate state-of-the-art inpainting models and observe a saturation in their standalone performance. In response, we introduce a methodology combining model ensembling with efficient post-processing strategies such as median filtering, histogram matching, and pixel averaging. Further anatomical refinement is achieved via a lightweight U-Net enhancement stage. Comprehensive evaluation demonstrates that our proposed pipeline improves the anatomical plausibility and visual fidelity of inpainted regions, yielding higher accuracy and more robust outcomes than individual baseline models. By combining established models with targeted post-processing, we achieve improved and more accessible inpainting outcomes, supporting broader clinical deployment and sustainable, resource-conscious research. Our 2025 BraTS inpainting docker is available at https://hub.docker.com/layers/aparida12/brats2025/inpt.
format Preprint
id arxiv_https___arxiv_org_abs_2510_15282
institution arXiv
publishDate 2025
record_format arxiv
spellingShingle Post-Processing Methods for Improving Accuracy in MRI Inpainting
Kulkarni, Nishad
Iyer, Krithika
Tapp, Austin
Parida, Abhijeet
Capellán-Martín, Daniel
Jiang, Zhifan
Ledesma-Carbayo, María J.
Anwar, Syed Muhammad
Linguraru, Marius George
Computer Vision and Pattern Recognition
Artificial Intelligence
Machine Learning
Magnetic Resonance Imaging (MRI) is the primary imaging modality used in the diagnosis, assessment, and treatment planning for brain pathologies. However, most automated MRI analysis tools, such as segmentation and registration pipelines, are optimized for healthy anatomies and often fail when confronted with large lesions such as tumors. To overcome this, image inpainting techniques aim to locally synthesize healthy brain tissues in tumor regions, enabling the reliable application of general-purpose tools. In this work, we systematically evaluate state-of-the-art inpainting models and observe a saturation in their standalone performance. In response, we introduce a methodology combining model ensembling with efficient post-processing strategies such as median filtering, histogram matching, and pixel averaging. Further anatomical refinement is achieved via a lightweight U-Net enhancement stage. Comprehensive evaluation demonstrates that our proposed pipeline improves the anatomical plausibility and visual fidelity of inpainted regions, yielding higher accuracy and more robust outcomes than individual baseline models. By combining established models with targeted post-processing, we achieve improved and more accessible inpainting outcomes, supporting broader clinical deployment and sustainable, resource-conscious research. Our 2025 BraTS inpainting docker is available at https://hub.docker.com/layers/aparida12/brats2025/inpt.
title Post-Processing Methods for Improving Accuracy in MRI Inpainting
topic Computer Vision and Pattern Recognition
Artificial Intelligence
Machine Learning
url https://arxiv.org/abs/2510.15282